Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0011 ATGGCCCAGCAGTCATCTAGGCTTCAGCGGTTGCTTACTCTCTTGGACACTGGGTCAACCCAAGCAACACGGTTGACTGCTGCTCGTCAGATAGGGGACATTACAAAATCACATCCTCAAGACTTGACCAGTCTTCTTAAGAAGGTTTCTCAATATCTGCGCAGTAAAAAATGGGATACAAGAGTGGCAGCTGCTCATGCAATTGGGTCTATCGCTGAGAATGTTAAGCACATAAATTTGACGGAACTTCTTGCTTCTGTTGTATCAAAAATGTCTGAGGATGGTATATCTTGCAGCGTCGAGGATCTGTGTGCATGGCCTTATGTACAATCAAAGATCAATGGAAGCTCATTTAGAAGCTTTGATATCAACAAGGTGCTTGAATTTGGAGCTTTATTAGCATCTGGAGGACAGGAATATGATATCGGTAGTGATAATATAAAGAGCCCCAAGGAGCGATTAGTTCGCCAGAAACAAAATCTTCGACGCCGTTTAGGTTTGGATGTATGCGAACAATTTATGGATATCAGCGATGTAATAAGAGATGAAGATCTTATTGCACACAAAGCAGTCTCACATCTCAATGGTAGCCATAGAGCATTTACATCTTATTCTGTACATAATAACATCCAGAAAATGGTTGCAAATATGGTTCCTACTGTGAAATCAAAGTGGCCAAGTGCAAGAGAACGGAATCTTTTAAAACGTAAAGCAAAAATAAACTCAAAGGACCAAACTAAAAGTTGGTGCGAAGATGGAAGTACTGAGGCGTCAGGTACTCCGAATTTAACTACTAAAGGCACATGTCCCGACTCAGTGAATTACAGTAAGGCGTTCATAGATGTTAATCATGATGAAGATGGCTTTGAGCATGATGAGAATGGACAATGGCCTTTCCACACTTTTGTTGAGCAACTTATCATTGATATGTTTGATCCTGTATGGGAGGTACGACATGGTAGCGTGATGGCATTAAGAGAGATTTTAACACATCAAGGCGCTTCTGCTGGGGTCTTTAAACACAACTCTCGCTTGGATGGGGCTTTCTTTGGTGAGGTAGAAGACAAAAGTATAACGAATATGTCAAAGAGAGAGAGGGAGATTGATTTAAACATGCAAGTTTCAGCGGATGAGTTTGAGTCAAACTTGAAAAGGCCAAAACTTGAAGATGTATCATCATCAACCTCTATGGATAGCATGATGACTTGCAGCAATGAATGTGATATTGACCTCAGCATTAGTTCTGAAGCCTACGGATGCAATTTACCTTTGGATTATGGGAATGGGCAATTTAATGGTACTTCCGTGGACATGGATCTGGAATCTTTCTCTGATGCCTTACATGATTCGTTCAAGGAACCTGCTAATGTCGCAGAGCAGAAGGGTTATTCTGATGATAATAAGATTCCCTCTGGAAATCTTCATGTGTTGAAAAATCTTCCTCAGAATTGTGAGCTTATGAATTTGGTTAAAGTGGCTAGAAGCTCCTGGCTTCAGAACTGTGGATTTCTTCAAGATTGTGTGATACGCTTTCTGTGTGTGCTGTCACTAGACCGCTTTGGAGATTACGTATCTGATCAGGTTGTTGCTCCTGTGCGTGAAACCTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATCCGGTACTAGTAAATGAAACATTGAACATATTGCTGATAATGCAGTGTAGACCAGAGTGGGAGATTCGTCATGGCAGCCTTCTGGGTATCAAATATTTAGTTGCTGTGCGGCAGGAGATGCTTCATGATTTGCTTGGTCGTGTTCTTCCTGCATGTAAATCTGGTTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCATCTGCAGCTGCAATTGTTTCTTTGCAGGGTCAAACATTGGACTCAATTGTCATGCTGTTGTGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCTACTAGCAGGCTTTTGTATCAGATTTTTGGAGGATCTGTGCATAGTGTAATGAATCTGCTAGCAGAAATCTATTCTCAAGAAGAGATGGTCCCTAAGATGTATGAAGTTTTTAAATTGGGAGACAGTGAAATGGCTGAACAAAACGGTGTTGGTGTTGGTTGTGAGGATGGAGAAGAAAATCCTTTTGTTCTTTCAACGTTGGCACCACGTTTGTGGCCATTTATGAGGCATAGTATCACGTCTGTCCGTTATTCAGCAATACGAACTCTGGAGAGGCTACTTGAAGCTGGACATAAGAGAAGCATATCTGAGCAGACTAGTGCTTCATTTTGGCCTTCTTGTATATTCGGAGATACCCTTAGAATTGTCTTTCAGAATCTGTTATTGGAAACAAATGAGGGTATTTTGCAATGTTCTGAGAGAGTTTGGAGCCTCCTTGTTCTGTGTTCTGTGGAGGACTTGGATACAGCTGCAAAGTCTTACATGGCTTCTTGGATAGAACTTGCATCAACACCATTTGGTTCAGCGTTAGATGCCTCAAAGATGTTTTGGCCTGTTGCCTTTCCACGAAAAAGTCAATTTAGAGCAGCAGCTAAAATGAGAGCAGCGAGGATTGAAAATGAATGTGGTGGAGATCTTGGCCTTGTTTCTACAAAAGGATCTATTCCACAAGATAGAAATGGAGATGTTCCTATGAGTTCTGCTAAGATAGTTGTTGGTGCTGATATGGACACATCTGTAACTCATACTCGGGTGGTTACAGCAACTGCATTGGGAATTTTTGCTTCTAAGCTCCCAGAGGATTCTATAAAATTTGTGATTGATCCACTGTGGAGGTCTCTAACCGCTTTGTCTGGTGTCCAACGCCAGGTTGCATCTATGATACTTATATCTTGGTTCAAGGAGATAAAGGGTAGGAATTCATCCGAAAACCTTAATGGTATTCCTGGTGCCCTCAAAGATTGGTTGCTGGACTTATTAGGATGTACTGACCCAGCATTCCCAACTAAAGATTCACTTCTTCCTTATGCCGAGCTTTCAAGAACTTATTCAAAAATGCGTAGTGAGACTGGCCAACTGCTAAATGCTATCAAGTCTTCTGGTATGTTTAATGAGTTATTGTCGACTACCAAAATTGAGTTGAATAGCTTGAGTGTGGATGATGCCATTAGTTTTGCATCAAAAGTTCCATCCTTGTGCAACGGAAGTTCTGTGAACGAATCCCTGGAAAAGAACACTGTGGATGATATTGAATCCTCAAAACAGAGGCTTTTGACAACTTCTGGCTATTTGAAATGTGTTCAGAGTAATTTGCATATTACGGTCTCATCAGCAGTTGCAGCAGCAGTTGTCTGGATGTCTGAGTTTCCTACACGACTCACCCCAATCATTTTGCCTTTGATGGCTTCAATCAAACGAGAGCAGGAGGAAGTACTGCAAATGAAATCCGCGGAGGCACTTGCTGAGCTAATGTATCACTGTGTCACACGTAGGCCTTGCCCCAATGATAAATTAATAAAGAATATATGCAGTTTGACATGCATGGATCCCTCTGAGACTCCCCAAGCTAAATCCATTTCCTCCATGGAGAGTATTGATGACCAAGGTCTTTTGTCTTTTGGAACTCCTGTGAGCAAGCAGAAGTCAAAGGTCCATGTGCTTGCTGGTGAAGATCGATCTAAGGTGGAAGGATTTATAAGTAGACGTGGGTCTGAACTATCATTGAGGCTTCTGTGTGAGAAGTTTGGTCCTTTGTTATTTGATAAGCTTCCTAAGCTGTGGGATTGCCTAACTGAGGTGCTTAAGCCATGCTCCTCTGAGGCTCAAGCTGTTACTAATGAAAATCAAGTTTCTGTGACGATAGAATCTTTTAGTGACCCCCAGACCTTGATTAATAATATCCAGGTGGTACGATCTATTGCTCCCTTGTTAAATGAGGAGTTGAAGCCAAAACTGTTGACACTTCTCCAATGCATTTTCAAATGTGTTCAGCATTCTCATGTTGCAGTTAGATTAGCTGCTGCACGCTGTATCACGTCCATGGCTAGGTCAATGACTGTAAAAGTTATGGGAGCTGTGATTGAAAATGCCATCCCTATGTTGGAAGATGCATCATCAGTTCATGCTCGACAAGGAGCAGGCATGTTGATTAGTTTTCTTGTTCAGGGACTAGGTGTAGAGTTGGTCCCTTATGCTCCTCTATTGGTGGTTCCACTTCTAAGGTGTATGAGTGATTGTGATCGGTCTGTCAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTACCATTACTGCCTTTAGCTCGAGGCCTTCCTCAACCAATTGGATTAGGGGAGGGTATATCTAGAAATGCAGAAGATCTGCGTTTTCTGGAGCAGCTACTTGACAATTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACACTGAGAAGGTATCAACAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGGCTTGGTAAGACACTTCAAGCCTCAGCAATAGTGGCCTCTGATATCGCTGAGCACCGAGCTTCAATTGGGAATGAAGATCTTCTGCCATCATTAATTATTTGCCCATCAACACTAGTTGGGCACTGGGCCTTTGAGATAGAAAAGTATATTGATGCTTCAGTTATATCTAGTCTTCAATATGTCGGTTCTGCTCAGGAGCGAGTGTTTCTTCGAGATCATTTTTGCAAGCATAATGTGATTATAACATCATATGATGTTATCCGTAAGGATATTGATTATTTGGGACAGCTTCTATGGAAATACTGCATTTTAGATGAAGGACATATAATCAAGAATGCCAAGTCTAAAGTTACTCTTGCTGTAAAGCAGTTGAAAGCCCAACACCGTTTGATATTGAGTGGGACACCGATACAGAATAATATCATGGACTTGTGGTCTCTCTTCGATTTTCTAATGCCTGGATTTCTTGGAACTGAGAGACAGTTCCAAGCCACATATGGAAAACCACTTTTAGCAGCAAGAGATCCAAAATGCTCTGCTAAGGATGCTGAAGCGGGGGCACTTGCAATGGAGGCATTGCATAAGCAGGTGATGCCTTTCCTCCTTCGGAGAACAAAGGATGAAGTCCTGTCTGATCTACCAGAGAAAATAATTCAGGACAGATTCTGTGATTTGAGCGCTGTACAGCTTAAACTTTACGAACAGTATTCTGGTTCTCATGTGAAACAAGAAGTTTCATCTATTGTAACAACAAATGAGCCTGGTGCAGCAGAAGGAAGTAGCAGTTCAACGAAAGCGTCTTCACATGTTTTCCAGGCAATTTCATTTCTTCAATCATCAGCACTCCAATACTTGCTAAAACTGTGTAGTCATCCATTGCTTGTCACTGGGGAGAAGATTCCAGATCCACTCTCTATCGTCCTCTCAGGATTGTTTCCTCCTGGCTCTGACATTGTTTCAGAACTTCACAAACTTCACCACTCCCCAAAATTGGTTGCCCTTCAGGAGATTCTTGAAGAGTGTGGCATTGGAGTTGATGCTTCAGGTTCTGAGGGTGCTGTTGGGCAGCACAGGGTCTTGATATTTGCACAACATAAGGCTTTTCTGGATATAATCGAAAGAGATTTGTTTCAGACAAATATGAAAAGTATCACATATTTGCGGCTGGATGGATCTGTTGAGCCAGAAAAGCGTTTTGATATTGTCAAAGCTTTCAATTCAGACCCTACAATTGATGCCTTACTGCTTACAACACATGTGGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGAGATCATCAGGCCATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCACCGTTTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAGCCTACAAAGGTTCAAAGTGTCTGTGGCTAATGCTGTCATCAATGCTGAAAATGCCAGTATGAAAACAATGAATACAGATCAGCTGCTTGATTTATTTGCATCAGCAGAAATCCCCAAGAAGGGATCTTCTGTTGCAAAGAGTTCAGAGAACAACTCAGATGGAGAAACAAAGTTAGTTGGGAGTGGGAAGGGGTTGAAAGCAATACTTGGGGGATTGGAGGAGCTGTGGGACCAATCACAATATACAGAGGAGTACAATCTGAGTCAATTCTTAGCAAAGCTTAATGGCTAA 6210 0.4179 MAQQSSRLQRLLTLLDTGSTQATRLTAARQIGDITKSHPQDLTSLLKKVSQYLRSKKWDTRVAAAHAIGSIAENVKHINLTELLASVVSKMSEDGISCSVEDLCAWPYVQSKINGSSFRSFDINKVLEFGALLASGGQEYDIGSDNIKSPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLIAHKAVSHLNGSHRAFTSYSVHNNIQKMVANMVPTVKSKWPSARERNLLKRKAKINSKDQTKSWCEDGSTEASGTPNLTTKGTCPDSVNYSKAFIDVNHDEDGFEHDENGQWPFHTFVEQLIIDMFDPVWEVRHGSVMALREILTHQGASAGVFKHNSRLDGAFFGEVEDKSITNMSKREREIDLNMQVSADEFESNLKRPKLEDVSSSTSMDSMMTCSNECDIDLSISSEAYGCNLPLDYGNGQFNGTSVDMDLESFSDALHDSFKEPANVAEQKGYSDDNKIPSGNLHVLKNLPQNCELMNLVKVARSSWLQNCGFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPVLVNETLNILLIMQCRPEWEIRHGSLLGIKYLVAVRQEMLHDLLGRVLPACKSGLEDPDDDVRAVAADALIPSAAAIVSLQGQTLDSIVMLLWDILLDLDDLSPSTSRLLYQIFGGSVHSVMNLLAEIYSQEEMVPKMYEVFKLGDSEMAEQNGVGVGCEDGEENPFVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGHKRSISEQTSASFWPSCIFGDTLRIVFQNLLLETNEGILQCSERVWSLLVLCSVEDLDTAAKSYMASWIELASTPFGSALDASKMFWPVAFPRKSQFRAAAKMRAARIENECGGDLGLVSTKGSIPQDRNGDVPMSSAKIVVGADMDTSVTHTRVVTATALGIFASKLPEDSIKFVIDPLWRSLTALSGVQRQVASMILISWFKEIKGRNSSENLNGIPGALKDWLLDLLGCTDPAFPTKDSLLPYAELSRTYSKMRSETGQLLNAIKSSGMFNELLSTTKIELNSLSVDDAISFASKVPSLCNGSSVNESLEKNTVDDIESSKQRLLTTSGYLKCVQSNLHITVSSAVAAAVVWMSEFPTRLTPIILPLMASIKREQEEVLQMKSAEALAELMYHCVTRRPCPNDKLIKNICSLTCMDPSETPQAKSISSMESIDDQGLLSFGTPVSKQKSKVHVLAGEDRSKVEGFISRRGSELSLRLLCEKFGPLLFDKLPKLWDCLTEVLKPCSSEAQAVTNENQVSVTIESFSDPQTLINNIQVVRSIAPLLNEELKPKLLTLLQCIFKCVQHSHVAVRLAAARCITSMARSMTVKVMGAVIENAIPMLEDASSVHARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDRSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGISRNAEDLRFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRASIGNEDLLPSLIICPSTLVGHWAFEIEKYIDASVISSLQYVGSAQERVFLRDHFCKHNVIITSYDVIRKDIDYLGQLLWKYCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRFCDLSAVQLKLYEQYSGSHVKQEVSSIVTTNEPGAAEGSSSSTKASSHVFQAISFLQSSALQYLLKLCSHPLLVTGEKIPDPLSIVLSGLFPPGSDIVSELHKLHHSPKLVALQEILEECGIGVDASGSEGAVGQHRVLIFAQHKAFLDIIERDLFQTNMKSITYLRLDGSVEPEKRFDIVKAFNSDPTIDALLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKVSVANAVINAENASMKTMNTDQLLDLFASAEIPKKGSSVAKSSENNSDGETKLVGSGKGLKAILGGLEELWDQSQYTEEYNLSQFLAKLNG 2069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0011 2069 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1828 1997 IPR001650 -
Lal1g0011 2069 CDD SF2_C_SNF 1822 1962 - -
Lal1g0011 2069 Gene3D - 1114 1424 IPR011989 -
Lal1g0011 2069 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1479 1649 IPR014001 -
Lal1g0011 2069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1700 2006 IPR027417 -
Lal1g0011 2069 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 1 2001 IPR044972 GO:0003677|GO:0016887|GO:0017025
Lal1g0011 2069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1445 1699 IPR027417 -
Lal1g0011 2069 Gene3D - 1441 1698 IPR038718 -
Lal1g0011 2069 Gene3D - 4 97 IPR011989 -
Lal1g0011 2069 Pfam Domain of unknown function (DUF3535) 796 1250 IPR022707 -
Lal1g0011 2069 Gene3D - 1709 2031 IPR027417 -
Lal1g0011 2069 Pfam SNF2-related domain 1485 1746 IPR000330 GO:0005524|GO:0140658
Lal1g0011 2069 Gene3D - 510 701 IPR011989 -
Lal1g0011 2069 SUPERFAMILY ARM repeat 6 1506 IPR016024 -
Lal1g0011 2069 CDD DEXHc_Mot1 1467 1699 IPR044078 GO:0005524
Lal1g0011 2069 Pfam Helicase conserved C-terminal domain 1850 1951 IPR001650 -
Lal1g0011 2069 SMART ultradead3 1463 1660 IPR014001 -
Lal1g0011 2069 SMART helicmild6 1865 1951 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0011 Lal-Chr1 138892 157916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0011 1849 1995 RAD5 or RAD16-like Gene Family AT1G11100 32.432 1.86e-18 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal1g0011 DUF3535 4e-103 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0011 K15192 - gmx:100777977 3470.63