Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0006 ATGTCATATATTCTCCTTCATCACTTCCCAAATCCCATGGCTTCCGCAGTTGCTCCCAAGATTCTATTATACAATCCTATCTTACGAAATGGGTCACCAAGGTTAAGGTTGTTGTTACTTAGACCAAGAAACTTAATCACTACTTGTATAAATCTCAAGGTATACGCCTCCCAGTCACAGGGTCCTCCTAGCAGTGGCAGAGCACCCCCTGCACCTGGAGTGGACACAAGAATCCATTGGGACAATGAAGATGAAGGTTGGATTGGAGAAGCTACTAAAAAGCCAAAGGAGAAGAAGAACCCCAACAACCTGTTGGGTCATAACTTTACTAATTTGCTCTCCACTTCTTCGGATTCTCATTATCAGTTCTTAGGAATATCAGCAGATGCAGATTTAGAAGAAATAAAAGGTGCTTACAGGAGACTATCAAAGGAGTACCATCCAGACACAACATCCCTCCCTCTTAAAACTGCCTCTGACAAATTCATGAAATTAAGAGAGGCTTACAATGTTCTTAGCAATGAAGAAAGTAGAAGGTTTTATGATTGGACCCTTTCTCAAGAAGCTGCGAGTCATCAAGCAGAAAAGATGAAGATGAGATTAGAGGATCCTTATGAGCAGGATGTTGAGAATTGGGAATCAGTTCCAGATATGGTTGATCGCCTTGGTGGAAAGAATTTGAAGCTTAGTGATCAAGCTGTTTCTGCCCTCACCATTGATATTTTTATCATTCTTTTTTCCATATGTTGCATCATTTACGTAATCTTTTTTAAAGAACCATATTACTAG 789 0.4005 MSYILLHHFPNPMASAVAPKILLYNPILRNGSPRLRLLLLRPRNLITTCINLKVYASQSQGPPSSGRAPPAPGVDTRIHWDNEDEGWIGEATKKPKEKKNPNNLLGHNFTNLLSTSSDSHYQFLGISADADLEEIKGAYRRLSKEYHPDTTSLPLKTASDKFMKLREAYNVLSNEESRRFYDWTLSQEAASHQAEKMKMRLEDPYEQDVENWESVPDMVDRLGGKNLKLSDQAVSALTIDIFIILFSICCIIYVIFFKEPYY 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0006 262 Pfam DnaJ domain 120 182 IPR001623 -
Lal1g0006 262 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT T, CHLOROPLASTIC 46 261 IPR044618 -
Lal1g0006 262 SMART dnaj_3 118 177 IPR001623 -
Lal1g0006 262 PRINTS DnaJ domain signature 121 139 IPR001623 -
Lal1g0006 262 PRINTS DnaJ domain signature 139 154 IPR001623 -
Lal1g0006 262 PRINTS DnaJ domain signature 157 177 IPR001623 -
Lal1g0006 262 CDD DnaJ 120 174 IPR001623 -
Lal1g0006 262 SUPERFAMILY Chaperone J-domain 112 185 IPR036869 -
Lal1g0006 262 Gene3D DnaJ domain 108 206 IPR036869 -
Lal1g0006 262 Coils Coil 155 175 - -
Lal1g0006 262 ProSiteProfiles dnaJ domain profile. 119 185 IPR001623 -
Lal1g0006 262 ProSitePatterns Nt-dnaJ domain signature. 162 181 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0006 Lal-Chr1 118314 120096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0006 120 187 C2H2 Transcription Factor Family AT1G74250 40.278 4.50e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0006 K23051 - nnu:104589413 301.597