Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0003 ATGGAATGGAATGAAGAGATGGGGAGAGGAAAGATCGAAATAAAAAGAATAGAGAATACAACAAATCGACAAGTAACATTCTGCAAGAGAAGAAATGGACTTCTCAAGAAAGCTTATGAACTATCAGTGTTGTGCGATGCAGAAGTTGCCCTCATCGTCTTCTCTAGCCGTGGTCGCCTCTATGAGTATTCTAACAACAACATAAGGTCAACTATTGACAGGTACAGAAAAGCGTGCTCAGATAATTCAAGTATGAGTACTGCCACTGAAATTAATGCTCAGTATTATCAACAAGAATCTGCAAAGCTGAGGCAGCAAATACAAATGCTGCAAAACTCTAACAGACACTTGATGGGTGATGCCTTGAGCACTCTGACTGTTAAGGAACTTAAGCAGCTTGAGAATAGACTTGAGAGAGGAATCACTAGAATCAGGTCTAAGAAGCATGAGATGCTGCTGGCTGAAATTGAGTACTTGCAGAAAAGGGAGATTGAACTGGAAAATGAAAATCTGTGCATTCGGACTAAGATAGCTGAAGGTGAGAGGCTTCAGCAAGCAAACATGGTTTCGGGACAAGAGTTGAATGCCATCCAAGCACTGGCTTCCCGGAATTTCTTCAATCCAAGCATGATGGAAACTGGAGCTGCCTACCCACAACCAGATAAAAAGATTCTTCATATTGGGTATTTATGA 693 0.4127 MEWNEEMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIDRYRKACSDNSSMSTATEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENLCIRTKIAEGERLQQANMVSGQELNAIQALASRNFFNPSMMETGAAYPQPDKKILHIGYL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0003 230 Coils Coil 93 113 - -
Lal1g0003 230 Gene3D - 19 102 IPR036879 GO:0003677|GO:0046983
Lal1g0003 230 CDD MADS_MEF2_like 8 81 IPR033896 GO:0000977|GO:0045944
Lal1g0003 230 ProSitePatterns MADS-box domain signature. 9 63 IPR002100 GO:0003677|GO:0046983
Lal1g0003 230 ProSiteProfiles K-box domain profile. 93 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal1g0003 230 Coils Coil 130 169 - -
Lal1g0003 230 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Lal1g0003 230 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Lal1g0003 230 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Lal1g0003 230 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 8 219 - -
Lal1g0003 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 219 - -
Lal1g0003 230 SUPERFAMILY SRF-like 8 82 IPR036879 GO:0003677|GO:0046983
Lal1g0003 230 Pfam K-box region 92 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal1g0003 230 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Lal1g0003 230 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Lal1g0003 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0003 Lal-Chr1 75170 79968 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0003 7 228 MADS-box Gene Family AT4G09960 75.217 9.45e-122 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal1g0003 K-box 2.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0003 K09264 - gmx:100301905 398.667