Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0001 ATGGGTGAACACGACGAAGAAGAGAGATATGAGGAGGAGGGCAATGGGGTAGACCCATATCCTCACGACTCCAAGACTCACAAGCATGCATCTCGAGATCGTGATTATGATAGAGATTCATCGAGAAGCAGCAGAGAAAAGGAAAAGGAACGAGAGAAAGGGAGGGAAAAGGATAGGAAAAGAGAAAAGGAGAGAGACCGAGATCATCGCCATCGCGATCACAGGGACAGAAGAGAAAGGGAAAAAGGGAGGGATAAAAATGATGATGATGATGATTATTACAGAAGGCGAGACTTTGACAGACGAAAGGATTATGATAGAGAGGACAGACATAAGCGCAGGTCTCGCTCTCGCTCCTCTTCACCATCCAGGGGTAGATCCCAACATCGATCAAGGTCTCGCTCAAAGAGTAAAGTGTTTCTTAGTATGAGGTTACATTTTATTTTTGCAATGCTAACATTATTTACCCACAGCAAAAGGATTAGTGGTTTTGATATGGCTCCTCCTCCTTCTGCAATATTAGCTGGTGCTTCCACCATTACAGCACATGCAACTGAAGCAAAAAAAGCACTCGAGGTTGAGACATATATAATAGTTCCACTAGACAATTATGAATTTGCTCTGAGGTGTAATGTGCCAGCATTTGCAGGTCAGATCACTGGGCCAAATCCTGCAATTCCTGCGGTGTTTCAAAACATGTTTCCGTTGGCTACCAGTCAGCCATTCAGTGCTCTCCCTGTCATGCCTGTTCAGGCTATGACACAACAGGCGACTCGACATGCTAGAAGGGTGTATGTTGGAGGGCTGCCTCCTACAGCCAATGAGCAGTCAGTTGCTACTTTCTTCAGCCAGGTCATGGCTAATATTGGAGGAAACACTGCTGGTCCAGGTGATGCGGTAGTCAATGTTTACATTAACCATGACAAGAAGTTTGCATTTGTTGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTCTGGATGGGATTATTTTTGAGGGTGCACCAGTTAAAGTCAGGAGACCTACTGATTATAACCCTTCTCTAGCTGCTACCCTAGGCCCAAGCCAACCCAACCCGAACCTAAACCTGGCTGCTGTTGGCTTAATACCTGGGTCGGCCGGTGGACTTGAAGGCCCTGATCGAATTTTTGTTGGCGGGGTTCCTTACTACTTTACAGAAAATCAGATCAGAGAGCTTTTAGAGACTTTTGGCCCTCTCCGTGGTTTTGATCTGGTTAAAGATAGAGAAACAGGAAATTCGAAGGGCTATGCATTTTGTGTTTACCAAGACCTTGCAGTTACAGATATTGCATGTGCAGCTCTGAATGGAATAAAGATGGGGGATAAGACTCTTACTGTTAGACGAGCTAATCAAGGTGCAAACCAACCTAAACCTGAGCAAGAGAATGTTCTAATGCATGCACAGCAACAGATTGCTCTGCAGAAACTCATGTTTCAACCAACATTAGTGGCTACAAAGGTGGTATGTTTAACTCAAGCAGTTTCTCCGGATGAGCTCAAAGAAGACGAGGACTATGAAGAGATTATTGAGGATATGAGACAGGAGTGTTCTAAATTCGGTACTTTGGTGAATGTCGTGATCCCCCGCCCACAACCGAATGGAGAACTGACTGCTGGAGTTGGAAAGGTGTTTTTAGAGTATGCTGACACTGATGGTGCTACAAAAGCCTTTACTGGATTGAATGGGCGGAAGTTTGGTGGAAATCAAGTACAAGCTGTCTTTTATCCAGAAAACAAATTTGCTCAGGGAGATTATGAAGGCTAG 1791 0.4484 MGEHDEEERYEEEGNGVDPYPHDSKTHKHASRDRDYDRDSSRSSREKEKEREKGREKDRKREKERDRDHRHRDHRDRREREKGRDKNDDDDDYYRRRDFDRRKDYDREDRHKRRSRSRSSSPSRGRSQHRSRSRSKSKVFLSMRLHFIFAMLTLFTHSKRISGFDMAPPPSAILAGASTITAHATEAKKALEVETYIIVPLDNYEFALRCNVPAFAGQITGPNPAIPAVFQNMFPLATSQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMANIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLAAVGLIPGSAGGLEGPDRIFVGGVPYYFTENQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQENVLMHAQQQIALQKLMFQPTLVATKVVCLTQAVSPDELKEDEDYEEIIEDMRQECSKFGTLVNVVIPRPQPNGELTAGVGKVFLEYADTDGATKAFTGLNGRKFGGNQVQAVFYPENKFAQGDYEG 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0001 596 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 501 586 IPR000504 GO:0003723
Lal1g0001 596 MobiDBLite consensus disorder prediction 14 115 - -
Lal1g0001 596 SMART rrm1_1 383 456 IPR000504 GO:0003723
Lal1g0001 596 SMART rrm1_1 263 341 IPR000504 GO:0003723
Lal1g0001 596 SMART rrm1_1 496 582 IPR000504 GO:0003723
Lal1g0001 596 MobiDBLite consensus disorder prediction 116 137 - -
Lal1g0001 596 Gene3D - 490 595 IPR012677 -
Lal1g0001 596 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 215 594 IPR006529 GO:0003723|GO:0005634|GO:0006397
Lal1g0001 596 CDD RRM3_U2AF65 494 582 - -
Lal1g0001 596 PANTHER RNA-BINDING PROTEIN 26 595 - -
Lal1g0001 596 SMART rrm2_1 496 582 IPR003954 GO:0003676
Lal1g0001 596 Gene3D - 357 472 IPR012677 -
Lal1g0001 596 SUPERFAMILY RNA-binding domain, RBD 247 348 IPR035979 GO:0003676
Lal1g0001 596 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 519 579 IPR000504 GO:0003723
Lal1g0001 596 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 384 453 IPR000504 GO:0003723
Lal1g0001 596 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 26 595 - -
Lal1g0001 596 MobiDBLite consensus disorder prediction 1 137 - -
Lal1g0001 596 Gene3D - 257 356 IPR012677 -
Lal1g0001 596 SUPERFAMILY RNA-binding domain, RBD 383 586 IPR035979 GO:0003676
Lal1g0001 596 CDD RRM1_U2AF65 261 343 - -
Lal1g0001 596 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 382 460 IPR000504 GO:0003723
Lal1g0001 596 Coils Coil 46 66 - -
Lal1g0001 596 CDD RRM2_U2AF65 382 458 - -
Lal1g0001 596 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 345 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0001 Lal-Chr1 58157 63098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal1g0001 384 575 Eukaryotic Initiation Factors Gene Family AT1G22760 24.352 2.94e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0001 K12837 - gmx:100793801 703.745