Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1550 ATGGAACTTTCCATTGAGGAAGGAGAAATCCCAATCCCAATAAACACTAATATTAATATTTATGGTGGTTGTGGGGGACATGGGAATGGGAATGGGAATGGACACAATACGATTCCTCTTCCTACTTCAAATGGGCAAGAGGATCATCATCATGTTCATGGATCTGGAGGACCCTTCAACAACAAGCAGCAGAAAGTGGTAAGGTACAGAGAATGCCTAAAGAACCATGCAGCTGCAATGGGAGGAAATGCCACTGATGGTTGTGGTGAGTTCATGCCAAGTGGTGAGGATGGTACCATTGAAGCTTTCAACTGTTCTGCCTGCAATTGCCACAGAAACTTCCACAGAAAAGAAGTAGAAGGTGACCCCTCTCCCCCTCATGAACTTTTCAATTTCAGCAGGAGGAAATTCCTTCTCGGCCCTTCACATCATCACAAGAACAATAATATCTTACCTTCTGAGGCTCTGGGGTACCCTACACCTACAAGAACTGTACCGCCACATCACATGATAATGCCTTACAACATAGGAGGGCCACTACTTGCAGCTTCAGAATCTGATGAACAAGAAGAGGGTGGTGTGGGTAGACCAGTAGTAGCAGCAGCACAGTTATTAGTGAAGAAAAGGCACAGAACAAAGTTCAGCCAGGAGCAGAAGGAGAAAATGCTGAGCTTTGCGGAGAAGGTTGGGTGGAAAATTCAGAAGCACGAGGAGTCAGTGGTGCAACAGTTCTGTCAAGAGATTGGGGTCAAGAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAGCACAATCTGGCCAAAAAGATGAATCATCTCCCACCTCCACCTCCACCTCCTTAA 843 0.4567 MELSIEEGEIPIPINTNINIYGGCGGHGNGNGNGHNTIPLPTSNGQEDHHHVHGSGGPFNNKQQKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEDGTIEAFNCSACNCHRNFHRKEVEGDPSPPHELFNFSRRKFLLGPSHHHKNNNILPSEALGYPTPTRTVPPHHMIMPYNIGGPLLAASESDEQEEGGVGRPVVAAAQLLVKKRHRTKFSQEQKEKMLSFAEKVGWKIQKHEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKMNHLPPPPPPP 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1550 280 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 53 270 - -
Lal19g1550 280 Gene3D - 200 269 - -
Lal19g1550 280 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 118 IPR006456 -
Lal19g1550 280 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 207 263 IPR006455 -
Lal19g1550 280 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 68 119 IPR006456 -
Lal19g1550 280 Pfam ZF-HD protein dimerisation region 67 119 IPR006456 -
Lal19g1550 280 SUPERFAMILY Homeodomain-like 206 268 IPR009057 -
Lal19g1550 280 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 53 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1550 Lal-Chr19 17697081 17697923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1550 66 271 ZF-HD Transcription Factor Family AT1G14440 55.204 9.48e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal19g1550 ZF-HD_dimer 3.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1550 - - gmx:100805652 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g2008 14 18985264 18986091 Lal19g1550 19 17697081 17697923 LSH
Lal7g1490 7 19623257 19624069 Lal19g1550 19 17697081 17697923 LSH