Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1549 ATGGAAGGGGGCATCCCTCGAACAGTGGAAGAAGTTTTCACAGACTTTAAGGGAAGACGTGCTGGTCTCATTAAGGCCCTTACTACTGATGTTGAAAGGTTTTACCAGCAGTGCCATCCTGAGAAGGAGAATTTGTGTCTGTATGGATTTCCAAATGAAACATGGGAAGTGAATTTACCTGTTGAGGAAGTGCCTCCTGAACTTCCAGAGCCAGCATTAGGTATCAACTTTGCTAGGGATGGCATGCAAGAGAAGGATTGGTTATCACTTGTTGCTGTTCACACTGACTCCTGGCTCCTTGCTGTTTCCTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACTATCTTCGAACTTGTGACAGGGAGTGCTAAGCAATCAAAGGACCAACCACCTTCTGCTGCTCTCAACAATGGTAGCAAATACAAATCAAGCGGAAAGGTGTCCCGCCAGTCTGAGTCTGAGGCCAAGGGAGTGAAGATGTCCGCACCACTGAAAGATGATGAGAGTGGAGGAGGAGGAGGAGGAGGAGAAGACGACGAACAAGGTGCAACATGTGGTGCCTGTGGTGACAATTATGGCACTGATGAATTCTGGATCTGTTGCGACATGTGTGAGAGATGGTTCCATGGCAAATGTGTTAAAATTACTCCGGCTAAGGCTGAGCACATCAAGCAATACAAGTGCCCAAGCTGCAGTAACAAGAAGGCTAGAGTTTGA 762 0.4633 MEGGIPRTVEEVFTDFKGRRAGLIKALTTDVERFYQQCHPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHTDSWLLAVSFYFGARFGFGKNERKRLFQMINDLPTIFELVTGSAKQSKDQPPSAALNNGSKYKSSGKVSRQSESEAKGVKMSAPLKDDESGGGGGGGEDDEQGATCGACGDNYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKKARV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1549 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Lal19g1549 253 Pfam PHD-finger 200 249 IPR019787 -
Lal19g1549 253 SUPERFAMILY FYVE/PHD zinc finger 190 250 IPR011011 -
Lal19g1549 253 MobiDBLite consensus disorder prediction 138 195 - -
Lal19g1549 253 Pfam Alfin 8 135 IPR021998 GO:0006355|GO:0042393
Lal19g1549 253 PANTHER CPG BINDING PROTEIN 1 253 IPR045104 GO:0006355|GO:0042393
Lal19g1549 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Lal19g1549 253 MobiDBLite consensus disorder prediction 138 161 - -
Lal19g1549 253 MobiDBLite consensus disorder prediction 162 178 - -
Lal19g1549 253 CDD PHD_AL_plant 200 249 IPR044104 -
Lal19g1549 253 SMART PHD_3 199 247 IPR001965 -
Lal19g1549 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Lal19g1549 253 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR-RELATED 1 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1549 Lal-Chr19 17681993 17686379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1549 1 250 Alfin-like Transcription Factor Family AT1G14510 77.200 8.09e-124 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lal19g1549 Alfin 1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1549 - - gmx:100807826 441.425