Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1548 ATGACCGTACGTGTGGACGCAGCCATGGCAGCAATCGGAGGGAAGGAGTGGTACTTCTATGTGCCAAGAGATAGGAAGTACAAGAACGGTGATCGACCAAACCGTGTAACAACATCTGGGTATTGGAAAGCAACAGGAGCCGATAGGATGATCCGAACTCTCAATTTTAGATCAATAGGGTTGAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATCCGAACCAGTTGGATCATGAATGAGTATCGTTTGCCCCGTCATGATACTCAACGTTATCAAAAGCGTCTTCAATTAGTTGTTATTAAGAGTAACACATACTACATAACACATTTGCAGGCTGAGATATCACTTTGCCGAGTGTACAAGAGAGCAGGAGTAGAAGACCATCCCTCACTTCCTCATTGTGTCCCAATATCTGATCATAGCAATGATAATATTAATGTCGAAATGATTCAGCAGAACCAGTACATGGGATCATCAATATTTGTTGGAAAAACAGCAAAGTCAATTATCAATCAGCAGCAAATAAGGAATATTGAAACGGAGGGAATTAAGACTACTAATAGTAATGGTTTGGATCATCATCATCATCTTTTGTCTACAGCACTTGGGCTGTCCAATCACAATGATTACCACCACCGTGCTAGGACTACTGCAACAACGGGACTAGTTCCAGTAATGGATCACAAGGTGGCGGAGGAGGAGCAACAAGGGTTGATGATGAATATGATGATGCAGCTACAACATCACTCTAAGCCCTCCACCTCTTTAGTCCCCACAATCTTCCCTTCTTCTTCCAACAATATTAACAATGATAATGTAGCAGCATCAGCAACCATTGATGATCTGAATAGGCTATTAACTTATCAACATCAGCAGCAGTGCTACAATAACAATAATCACTTGTCTACTTTCCTGATTCAACCACCGCCACCAGCATCATCTCTACCAAATTCACTTCCAGCCACTTTCTCTGACCACCCATCAGTTTGGGAATGGAACCCATTCCCTGATCAGCCCAACCGCGACTACAGCAACATGTTCTTCAAGTAA 1062 0.4256 MTVRVDAAMAAIGGKEWYFYVPRDRKYKNGDRPNRVTTSGYWKATGADRMIRTLNFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPRHDTQRYQKRLQLVVIKSNTYYITHLQAEISLCRVYKRAGVEDHPSLPHCVPISDHSNDNINVEMIQQNQYMGSSIFVGKTAKSIINQQQIRNIETEGIKTTNSNGLDHHHHLLSTALGLSNHNDYHHRARTTATTGLVPVMDHKVAEEEQQGLMMNMMMQLQHHSKPSTSLVPTIFPSSSNNINNDNVAASATIDDLNRLLTYQHQQQCYNNNNHLSTFLIQPPPPASSLPNSLPATFSDHPSVWEWNPFPDQPNRDYSNMFFK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1548 353 ProSiteProfiles NAC domain profile. 1 126 IPR003441 GO:0003677|GO:0006355
Lal19g1548 353 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 8 348 - -
Lal19g1548 353 Pfam No apical meristem (NAM) protein 11 87 IPR003441 GO:0003677|GO:0006355
Lal19g1548 353 Gene3D NAC domain 5 129 IPR036093 GO:0003677|GO:0006355
Lal19g1548 353 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 348 - -
Lal19g1548 353 SUPERFAMILY NAC domain 9 125 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1548 Lal-Chr19 17677113 17680430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1548 8 147 NAC Transcription Factor Family AT2G02450 70.000 1.53e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal19g1548 NAM 9.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1548 - - gmx:100792622 314.694