Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1545 ATGAAGATAATTAATGACACAGGGTTGAAAGCATCAGTGGCAGAGAAGACTAGGATGCAGTCAGCAGCAAGAGAAGAGAATGAATGCATGGTGAGGGAGCAAGACCGTTTCATGCCAATTGCAAATGTGATAAGGATAATGAGGAAGATCCTGCCACCACATGCAAAAATATCTGATGATTCAAAAGAAACAATACAAGAGTGTGTGTCTGAGTATATAAGCTTCATAACTGGTGAAGCCAATGAGCGTTGCCAAAGGGAACAACGCAAGACTATCACTGCAGAAGATGTGCTTTGGGCTATGAGCAAGCTTGGATTCGATGACTACATTGAACCTCTCACAATGTACCTTCATAGGTACCGTGAGTTGGAGGGTGACAGGATCTCAATGAGGGGTGAACCACTTGGAAAGAGGAGTACTTGTATGGAATATGGGACAGTAGGTGTTGGTGGTACTGCTTTTGTTCCACAATTTCATCATTACCCAAATGGGTATTATGGAGAATCAGCTATGGAGAGTTACATGAGGGATGCTGCACCAAACAATAATAATGATAATTCTGGGTCTGCATCTCAGGTTGCTGCAACAATCACAAGTGCTGATCAACCAAATGGTCAATATAAATGA 627 0.4226 MKIINDTGLKASVAEKTRMQSAAREENECMVREQDRFMPIANVIRIMRKILPPHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRISMRGEPLGKRSTCMEYGTVGVGGTAFVPQFHHYPNGYYGESAMESYMRDAAPNNNNDNSGSASQVAATITSADQPNGQYK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1545 208 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lal19g1545 208 MobiDBLite consensus disorder prediction 176 208 - -
Lal19g1545 208 Gene3D Histone, subunit A 22 141 IPR009072 GO:0046982
Lal19g1545 208 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Lal19g1545 208 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Lal19g1545 208 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Lal19g1545 208 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 193 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lal19g1545 208 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 14 193 - -
Lal19g1545 208 SUPERFAMILY Histone-fold 34 131 IPR009072 GO:0046982
Lal19g1545 208 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1545 Lal-Chr19 17661035 17661762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1545 26 165 CCAAT-HAP3 Transcription Factor Family AT5G47670 72.185 2.08e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal19g1545 CBFD_NFYB_HMF 3.6e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1545 K08065 - gmx:100800011 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1484 7 19575445 19576213 Lal19g1545 19 17661035 17661762 LSH