Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1543 ATGGGGAATGCGAATGGGAGTAGTAGTCCTCGTTCAGAATCAGAATCGGAACCAGAATCAGAAATTGAACAACATCAAAGTCATGATCATGATGTTCCTCTTCCTCCTTCTCCTGAATTATCTGTTATCATCCCTACACCTGCTACTCATTCTCCTTTACTCTTCACTCCTCAGGTCCCGGTGGTTCCACTCCAAAGACCTGATGACTTACATGCCCCTACCCATTCTTGGATGCAAGGCTATGAAGATAACATGTATGCTGAACAAGGAATCCCCACAATGATTACATGGAGTTATGGTGGAAAAGAAGTAGCTGTTCAGGGATCATGGGATAATTGGAAAACAAGAATGCCCTTGCAGAGATCAGGGAAAGACTTGACAATAATGAAGGTTCTGCCATCCGGTGTTTACCAATACAGATTTATTGTCGACGGACAGTGGAGGTACACTCCAGACTTGCCTTGGGCTCAAGATCATGCTGGGAATGCTTACAACATTTTGGACTTGCAGGACTACGTTCCTGAAGACATCGGAAGCATTTCTAGTTTTGCGCCTCCTCAATCACCAGACTCGAGTTATAACAACTTAGAACTTAGTTCTGAAGATTATGCAAAGGAGCCGCCAGTTATTCCACCACACTTGCAAATGACACTGCTAAATGTGCCTGCAACAAACATGGAAGTCCAACCTCCTATGTCAAGACCTCAACATGGAGTGCTGAATCATCTTTACATGCAGAAAGGAAAGAACAGTCCTTCAGTGGTTGCACTTGGTACAACTCATCGGTTTCTTGCCAAATATGTTACTGTAGTGTTGTACAAGTCTCTGCAGAGGTAA 837 0.4385 MGNANGSSSPRSESESEPESEIEQHQSHDHDVPLPPSPELSVIIPTPATHSPLLFTPQVPVVPLQRPDDLHAPTHSWMQGYEDNMYAEQGIPTMITWSYGGKEVAVQGSWDNWKTRMPLQRSGKDLTIMKVLPSGVYQYRFIVDGQWRYTPDLPWAQDHAGNAYNILDLQDYVPEDIGSISSFAPPQSPDSSYNNLELSSEDYAKEPPVIPPHLQMTLLNVPATNMEVQPPMSRPQHGVLNHLYMQKGKNSPSVVALGTTHRFLAKYVTVVLYKSLQR 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1543 278 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 278 IPR043554 -
Lal19g1543 278 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 278 - -
Lal19g1543 278 SUPERFAMILY E set domains 90 176 IPR014756 -
Lal19g1543 278 Gene3D - 180 276 - -
Lal19g1543 278 MobiDBLite consensus disorder prediction 1 42 - -
Lal19g1543 278 CDD E_set_AMPKbeta_like_N 92 168 - -
Lal19g1543 278 Gene3D Immunoglobulins 84 173 IPR013783 -
Lal19g1543 278 MobiDBLite consensus disorder prediction 14 32 - -
Lal19g1543 278 Pfam Glycogen recognition site of AMP-activated protein kinase 91 170 IPR032640 -
Lal19g1543 278 SMART AMPKBI_2 186 276 IPR006828 GO:0005515
Lal19g1543 278 SUPERFAMILY AMPKBI-like 173 275 IPR037256 -
Lal19g1543 278 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 204 274 IPR006828 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1543 Lal-Chr19 17652411 17654886 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1543 K07199 - gmx:100777497 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1543 19 17652411 17654886 Lal5g1535 5 17979203 17982205 PCT
Lal19g1543 19 17652411 17654886 Lal3g0226 3 1508313 1511708 PCT