Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1538 ATGAAAGCCTCAAAGCAGCAACAAAAGCACCAACAGAGAGGGTGCAAGGCCTTGTGTTGCAGCTGCAGCAGGGTTAGTGTTTCTTCCTCAGAATTAGAAACAAAGAGCACTGTCTCTGATAGATACCCTTCAGTTTCAAGCCTAGCTCATGCAATGGTGCAAGAAAGACTTGATCAAATGATTAGGGAAAGGTTGGAAAGTAAAGATGTAGAGAGAAGAAGAGAAGAAAGAAGTGAAGGAACAAAGTTCGTGGTGATGGTAGCAATGGAGAAGTCATCTTATGATCCAAGAGAAGATTTCAAGGAGTCAATGATGGAGATGATAAGTGCAAACAGGCTTAAAGATGCAAAAGATCTTCGTAGTCTATTGAATTATTATATGTACATGAACTCTAAAGAGTTCCATAGTGTGATACTAGAGGTTTTTCATGAGAATATACTCCCGTTTTGCTAA 453 0.3951 MKASKQQQKHQQRGCKALCCSCSRVSVSSSELETKSTVSDRYPSVSSLAHAMVQERLDQMIRERLESKDVERRREERSEGTKFVVMVAMEKSSYDPREDFKESMMEMISANRLKDAKDLRSLLNYYMYMNSKEFHSVILEVFHENILPFC 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1538 150 PANTHER TRANSCRIPTION REPRESSOR-RELATED 11 144 - -
Lal19g1538 150 Pfam Transcriptional repressor, ovate 93 144 IPR006458 -
Lal19g1538 150 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 87 145 IPR006458 -
Lal19g1538 150 ProSiteProfiles OVATE domain profile. 89 148 IPR006458 -
Lal19g1538 150 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 11 144 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1538 Lal-Chr19 17629962 17630642 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lal19g1538 Ovate 1.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1538 - - var:108330150 205.682