Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1522 ATGCACAACTTTGGCTTTACTTCATATCTTCACCTAGCTTATTTTATTGTGTTAATGCAGTCCTCTATGGATGTAGACTTCTTTACAGAATATGGTGAAGGGAGTAGATACAAAATAGAAGAAGTAATTGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCTTGTGATACACACACAGGAGAAAAGGTTGCAATAAAGAAAATAAATGACATATTTGAACATGTCTCTGATGCCACCCGCATTCTTCGCGAGATCAAACTTCTTAGACTCTTACATCATCCTGATATTGTGGAGATCAAGCATATTTTGCTACCCCCTTCTAGAAGGGAATTCAAAGATATATATGTTGTTTTTGAACTCATGGAATCTGACTTACACCAGGTCATCAAAGCAAATGATGATTTGACTCTTGAGCATTACCAGTTTTTCCTCTATCAACTTCTTCGAGGCTTGAAGTATATACACACAGCAAATGTTTTTCACCGAGATCTAAAGCCAAAAAACATTTTAGCAAATGCTGATTGCAAACTGAAGATTTGCGACTTTGGTCTTGCCAGGGTGGCTTTCAACGATACACCAACTGCTATATTTTGGACGGATTATGTTGCGACAAGGTGGTATAGAGCTCCTGAGTTGTGTGGATCCTTTTTCTCCAAGTATACACCAGCTATAGACATATGGAGCATTGGTTGCATTTTCGCAGAACTTCTAACTGGAAAACCACTTTTCCCAGGGAAGAATGTTGTCCATCAATTGGATATAATGACTGATTTTCTGGGAACACCATCTCATGAAGCCATTGCTAGGATACGAAATGAAAAAGCTCGGAGATACTTGAGCAGCATGCGTAAGAAGAAGCCGGTTCCTTTCTCCCACAAGTTTCCTAATGCAGACCCCCTTGCTCTTCGTTTGTTAGAAAGGATGCTGGCATTTGAACCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCAGATCCATATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAACCTTCAGCTCAACCAGTTACCAAGATGGAATTTGAGTTTGAGAGGCGCAGAATAACAAAGGAAGATGTGCGAGAGCTTATATACCGAGAGGCTCTAGAGTACCATCCGAAGATGTTAAAGGAACATCTAGAGGGAGAAGAGCCAACAGGTTTCATGTATCCAAGTGCTGTGGACCACTTCAAGAAGCAATTTGCATATCTTGAGGAGCATTATGGAAAAGGTGGAACAGTTATTCCACCTGAGAGGCAACATGCATCATTACCCAGGCAGTGTGTGTTGTATTCAGATAACTCAAGACAGAATAAATCTGAGGTTGCAGATGATCTCTCCAAGTGTTGCATCAAAGAAGTTGAGAGGTCAGCCATAGATAGAAGTGGTGCTATTCCTATCAACAGGTTTCCTTTACAAGGTCCTGAAAATATTCAAGGCGTTGCTGCACAGCATGGAAAAGTTGTTGGTTCAGCATTGCGTTACAACAACTGTGGGGTAGCAGTGAAAGTAGCAGAGGCCGAGCAGAGGAGGATGGTTAAGAATCCATCTGTTTCAGCGCAGTATGCTGCTTCAAGCTGTTCCTATCCTAAGAGAAACCCAAACTGTAAAAATGAGAGGGCAGAAGATAATGTGATTGAGGGTTCTAATGGGCTTCAGCCAAAGCCTCAATACGTAGCGCGTAAAGTCGCTGCTGCTGCTCAAGGTGGAGCTGATGGTAATTGGGCTACTACCATGGCTTCTGGAGGATCCAAATCAGTGGCCTTCATCCTCTTGGCACTAAATCTTGCATTGTATTTCATTGTTCTTGTAATTGCTTCATGGGCAATAAATCATGGGATCCATAGGTCTCGTGAAACAGCATCTGTTTTATCCATTCCAGCTCGTATATTTCCAATATATTTCCCAATGGGAAACATGGCAACTGGTTTCTTCATAATATTTTCTCTCATTGCTGGTGTTGTTGGATTCACCACTTCATTCACTGGTTTACTTAACATTTTTGAGTGGAATGCCCCAAACTTACATGCAGCTGCCATATCTTCATTAACAACATGGGCACTCACTTTACTCGCCATGGGATTTGCATGCAAAGAAATTCAACTTGGCTGGACAGACTCAAACCTGCGTACCTTAGAAGTGTTTACGATAATTGTAAGTGCAACACAAATGTTATGCACCGGTGTTATCCATGCTGGGGTTTCAGAATCTGTTCTGCAGAGTGGTGGAAGAGTCTGA 2238 0.4187 MHNFGFTSYLHLAYFIVLMQSSMDVDFFTEYGEGSRYKIEEVIGKGSYGVVCSACDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLHHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTLEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIMTDFLGTPSHEAIARIRNEKARRYLSSMRKKKPVPFSHKFPNADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREALEYHPKMLKEHLEGEEPTGFMYPSAVDHFKKQFAYLEEHYGKGGTVIPPERQHASLPRQCVLYSDNSRQNKSEVADDLSKCCIKEVERSAIDRSGAIPINRFPLQGPENIQGVAAQHGKVVGSALRYNNCGVAVKVAEAEQRRMVKNPSVSAQYAASSCSYPKRNPNCKNERAEDNVIEGSNGLQPKPQYVARKVAAAAQGGADGNWATTMASGGSKSVAFILLALNLALYFIVLVIASWAINHGIHRSRETASVLSIPARIFPIYFPMGNMATGFFIIFSLIAGVVGFTTSFTGLLNIFEWNAPNLHAAAISSLTTWALTLLAMGFACKEIQLGWTDSNLRTLEVFTIIVSATQMLCTGVIHAGVSESVLQSGGRV 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1522 745 Pfam Protein kinase domain 37 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g1522 745 Gene3D Transferase(Phosphotransferase) domain 1 123 351 - -
Lal19g1522 745 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 21 490 - -
Lal19g1522 745 SUPERFAMILY Protein kinase-like (PK-like) 34 332 IPR011009 -
Lal19g1522 745 Pfam AWPM-19-like family 594 733 IPR008390 -
Lal19g1522 745 CDD STKc_TDY_MAPK 36 373 - -
Lal19g1522 745 Gene3D Phosphorylase Kinase; domain 1 52 373 - -
Lal19g1522 745 ProSiteProfiles Protein kinase domain profile. 37 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g1522 745 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Lal19g1522 745 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lal19g1522 745 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 21 490 - -
Lal19g1522 745 SMART serkin_6 37 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1522 Lal-Chr19 17516570 17528343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1522 20 575 MAP Kinase Gene Family AT5G19010 78.660 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Lal19g1522 Pkinase 3.4e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1522 19 17516570 17528343 Lal19g1522 19 17516570 17528343 ECH
Lal14g1965 14 18730995 18736708 Lal19g1522 19 17516570 17528343 LSH
Lal7g1455 7 19369673 19374516 Lal19g1522 19 17516570 17528343 LSH