Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1520 ATGTCTACATCACGACCGTTCGATATGATAATGGATTTGAATGACTCCAAATACCTGTGGAAGATTGCAGTCAGAATAACTGACATTTGGTATGTGCAACTACCTCCCAAACCCGGACATCTGGAAATGATATTAATGGATTCTAAGGGGGACAGAATTCAAGTCTCTGTCCGAAAGGATCAGTTTAACGAATGGAGAGAACATTTGGTTGAGAGTTCAACTTATGTCATGCACAATTTTAATGTCATGCACAATGACATCCAATTTAAGGCATGTGACCATGTTTACAGAATGCAATTCACTGCCGGTACCACTCTCAAACAAAGAGAATTTCCTGATATTCCTGAATGGGAATATGATTTCAAAAAGTTTGGTGACATCCTTGACGGAAACGGTAGAAATAATTTACTAATAGATATCATTGGTGCTTTTGATAAGGTAATATTCTCCCAAACACAAGGCAATTTGAAGAAAGTTGTCTTCAGTTTGAAAGATTTTAGTGGTGATTTCATTAACTGTACTATGTGGGAATCACATGCTACCAAATTCGAGAAACACTATAACAACCACTGTAAGTATCCACATAGCATTTCCAACTCATGGTGCGGATCAAAAATATTGATTGGTGAAGAAATTCCCAACATTGACAAGTACAAACAAAGTTTTTCAACTTTTAGTCTATCATGTGATACATTGAGCCATAGTAACAGCCAAATGTCACAATATTCTAACTTATCTGATGATGAGCGATTTATGTATAAAGCTGAAGTCAAGAGTATTACAGAAATTTCTGCAATTACATCTTCTGAGGAAATAACCTGTGTAACAGTTGGGACGACAGCAATGTTTGTTGTTGGCAAACACGGATGGTACTATGAAGGTTGTACTAAATGTACAAAGAAGACTGATGTTAAAGATGGCCCATTCACATGCAAGTGTGGCACATACAATCAGAAGTCTTCACCAAGGCAATTTGGTTTGCTTAATACTGTTTTGACTCTCTATATGTCCATACTATTTTGTATAATGTCTCTTTCACACCCCTTCGATATGATCACTGATGTGAATGATTCCAAACATTTTTGGAAAATAGCTGTTCGAATAACAAAACTTTGGTTTGTTCAAAAACCACCCAAATCTGGACATTTAGAGATGGTTTTGATGGATTCAAAGGGGCACAAAATTCAAGTCTCCGTTGTAAAGGAAGATTTTATTCGATGGCGTAATTATTTAGTGGAGTATGATACTTATATGATGCAAAACTTTGATGTGATGCTAAATGACTGTGAATTTAAAGCATGCGACCATCTTTATCGGATGGAGTTCAATGCCAATACAATAGTTGAACGACTTATATGTCCTGCTATTCCTCTTTTTGAATACGAATTCAAAAAATTTGCTGAAATTGTAGCTGGCCAGTTTTCAAGTTATTTGTTAATAGAAATTATCGGTGTAGTTGAATACAAGTCCATTTTTTCCCAAACAGAAACAAAATTAAAGAAAGTTACCTTTGATCTGATAGATTTTTGCGGTGATATCATTACATGTAATCTATGGCATTCACTTGCGATGAAATTTATCAATTATTACAAAAAACGGCGAAATGGTGAGCCAATGATCATTTTATTAACAAATGCTAAAGTCAAGAAAGCAAAAGGTGATTGTCCAACAATAGTTTCAAGTTCATGGTGTGGATCAAAGTTATTGATTGGGGAAGAAATAAATGACATTGCAAAGTATAAGCAAAGGTTTTCTTCTTTGCCTCTATGGTTTGACCAATTCAGTGAAGGACAATGCCAGTTACCATCACCTCAAGCTGTGTCTTTTACTGCTGAACATGATCCAGACCACCTTGAAGTCATAACTTCTTCCAAGAGAATGTGGGGTGAGTTAGATTTGGATTTGGCTCAAAGCCCTTTACAATCTTCCTCTGGAATTTCATCTTCCAATGTTGCAAAGCATATGAAGACTAAATAA 1977 0.3571 MSTSRPFDMIMDLNDSKYLWKIAVRITDIWYVQLPPKPGHLEMILMDSKGDRIQVSVRKDQFNEWREHLVESSTYVMHNFNVMHNDIQFKACDHVYRMQFTAGTTLKQREFPDIPEWEYDFKKFGDILDGNGRNNLLIDIIGAFDKVIFSQTQGNLKKVVFSLKDFSGDFINCTMWESHATKFEKHYNNHCKYPHSISNSWCGSKILIGEEIPNIDKYKQSFSTFSLSCDTLSHSNSQMSQYSNLSDDERFMYKAEVKSITEISAITSSEEITCVTVGTTAMFVVGKHGWYYEGCTKCTKKTDVKDGPFTCKCGTYNQKSSPRQFGLLNTVLTLYMSILFCIMSLSHPFDMITDVNDSKHFWKIAVRITKLWFVQKPPKSGHLEMVLMDSKGHKIQVSVVKEDFIRWRNYLVEYDTYMMQNFDVMLNDCEFKACDHLYRMEFNANTIVERLICPAIPLFEYEFKKFAEIVAGQFSSYLLIEIIGVVEYKSIFSQTETKLKKVTFDLIDFCGDIITCNLWHSLAMKFINYYKKRRNGEPMIILLTNAKVKKAKGDCPTIVSSSWCGSKLLIGEEINDIAKYKQRFSSLPLWFDQFSEGQCQLPSPQAVSFTAEHDPDHLEVITSSKRMWGELDLDLAQSPLQSSSGISSSNVAKHMKTK 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1520 658 Gene3D - 455 588 IPR012340 -
Lal19g1520 658 Gene3D - 112 229 IPR012340 -
Lal19g1520 658 Pfam Domain of unknown function DUF223 384 473 IPR003871 -
Lal19g1520 658 Pfam Domain of unknown function DUF223 42 136 IPR003871 -
Lal19g1520 658 SUPERFAMILY Nucleic acid-binding proteins 6 108 IPR012340 -
Lal19g1520 658 PANTHER REPLICATION FACTOR A 1, RFA1 365 553 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal19g1520 658 PANTHER REPLICATION FACTOR A 1, RFA1 23 311 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal19g1520 658 SUPERFAMILY Nucleic acid-binding proteins 461 586 IPR012340 -
Lal19g1520 658 CDD RPA1_DBD_A_like 21 105 - -
Lal19g1520 658 SUPERFAMILY Nucleic acid-binding proteins 119 225 IPR012340 -
Lal19g1520 658 PANTHER BNAC08G15530D PROTEIN 23 311 - -
Lal19g1520 658 PANTHER BNAC08G15530D PROTEIN 365 553 - -
Lal19g1520 658 Gene3D - 5 108 IPR012340 -
Lal19g1520 658 Gene3D - 348 450 IPR012340 -
Lal19g1520 658 SUPERFAMILY Nucleic acid-binding proteins 348 450 IPR012340 -
Lal19g1520 658 CDD RPA1_DBD_B_like 482 584 - -
Lal19g1520 658 CDD RPA1_DBD_A_like 363 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1520 Lal-Chr19 17507067 17512115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1520 20 176 Core DNA Replication Machinery Family AT4G19130 23.214 1.87e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1520 - - lang:109343677 480.33