Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1518 ATGGTTTCATTGGTTGCCAGTGGTAGCTGTCAAATGTCTCCTTCAGTTGTCCAAGAAAAAGGAAGTAGGAACAAGAGAAAATTCAGGGCTGATCCACCTTTAGGGGAGCCAAATAAGATAATTCCTGCATCTCAACATGATGGCCTCAGTTATGAGTTCTCTGCTGAGAAATTTGAAATAAGCACAGGTCATGTCCAAGCTACTGCCTGTGACCTGTGTAGTATTAACCATGATTATTCTGATGGGTTGAAGCTTGACCTTGGATTGTATAGTCCTGGGAGTTCATGTGAGGTCGGACCTTGTCAACCCAAGGAAGAAGTTGAGGCAGATGAATATAATGATGCTGATTGGAGTGATCTCACGGAAGCCCAATTAGAAGAACTTGTCTTGAGTAATTTGGATGCCATTTTCAAGAATGCAATTAGAGAAATTGTTGCACATGGCTACACTGAAGAAGTTGCTAGTAAGGCAGTCTTAAAGTCTGGCATCTGTTATGGATGTAAAGATACTGTGTCTAATATAGTTGACAATACCCTACCCTTTCTAAGGAAAGGCCAAGAAGATTATCCTTCACGAGAGCACTATTTCAAAGATTTAGTGCAACTCGAGAAGTATATCTTGGCTGAATTGGTTTGTGTTCTTCGAGAGGTTAGGCCTTTCTTCAGTACTGGGGATGCTATGTGGTGTTTGTTAATTTGTGATATGAATGTAGCACATGCTTGTGCAATGGACTGCGGCCCTTTAAGTAGTTTAGGTAGTGATGGAACCGCTGATGGCTGTTCATCTAACCAAACAGAATTAAAGCCAAAAGCAGAAACCAGAGTTCCTGATTTGAGTCTTCCAAGTCCTTGTAAACCAATTCCCGCTGTTTCTCATACTCCTCAATCTAAGAAATCCCTTGTGGCTGGAATTCCAGGTGTAAACAACTTCAAGAATTCTCGAAGTATTGGCAGTCCCTCAGAGAATGAGGGTGTTAGTTGTGGACCTCTCTGTGTTGATAAAGCATTTAATGCTACCGGAACACCCCAATCTCCCTTGCTGGAAGAAAAGTGTGGGAATGTTAGGAAGGTCCATTCTGGTAGCAGCAAGAGGGACTACATTCTTCGGCAGAAATCATTTCATGTGGAAAAAAGTTACCGGACTTATGGATCTAAAGGGTCTTCAAGAGGAGGGAAGCTGAGTAGCTTAAGTGGTTTAATCTTGGATAAAAAACTTAAATCTGTGTCGGAATCTTCTACCATAAGCTTAAAGAGTGCATCCTTACAGATAAGTAAGGCCACTGGAGTTGATGTTACTCAAGACAATCTTGATGCTAGTTTCTCACCTAATCCTGGACCATCTACCCCTGCTGCCTTCAGTGTGGACTCTGCTGATGCTGTTTTCAGATCATTCAATACTTCATTTTCAGTGCATGCAGCAAATAATATTCCTTCTTTCAGTAGCCCTGGTTCATTATCACTTACAGATACTGATCTTTCTCTTTCATTGTCTTCAAAAACCATGTCTACAGCTCCTGTGTGTGCACCTAATAGTTGTCATGTGGGGATCCCATACGATAAGTCCCAAGGGCAGTGGGTACCCCAGGATAAAAAGGATGAGATGATTTTGAAACTTGTTCCAAGGGTCCGGGAGCTTCAAAATCAGCTTCAAGAATGGAATGAGTGGGCCAATCAAAAGGTGATGCAGGCTGCTCGACGACTGAGTAAGGACAAGGCTGAGCTTAAGACACTAAGGCAAGAAAAAGAGGAAGTTGAACGTCTTAAGACAGAGAAGAGGTCTCTTGAGGAAAACACTGTGAAGAAACTCTCTGAGATGGAAAATGCCTTGTGTAAAGCTAGTGGGCAGGTACAGCGAGCTAATGCTGCGGTCCAGAAGCTTAAGGTGGAGAATGCTGCTTTGAGGATAGAGATGGAGGCTGCTAAGCTACGTGCTTCAGAAACGGCTTTAACCTGTCAAGAGGTCTCAAGGAGAGAAAAGAAAACCCAATTGCAATTTCAGTCATGGGAAAAGCAGAAGTTCTTGCTTCAGGAAGAGCTAGTGAGTGAAAAACGCAAATTGGCACAGCTGGTTCAGGAATCAGAGCAAGTTAAAATGCAACAGGAGCAAGTTCAGGCTAGATGGCAGCAGGAAGCAAAGGCAAAAGAAGAACTTCTTTTACAAGTGAGTGCTATAAGGAAAGAGAGAGAACAAATTGAGGAGTTAGCAAAATCCAAGGAGGATATGATCAAATCGAAAGCAGAGAGGAATCTGCAAAGATACAAAGATGATATCCTTAAACTTGAAAAAGAAATTGGACAACTGAGACTGAAGAGTGACTCTTCCAAGATTGCTGCACTGAGGATGGGCATTGGAAGGGATGCCAGCAGATCTGCTGACACAAAAAATGGCAGTGCTCTAGAGGAACCCCAGACTTCTTTTATTTCAGAACTGGTTAGTGATTACTCAGTGACAGGCGGCGTGGAACGGGAAAGGGAATGTGTAATGTGCCTTTCTGAGGAGTTGTCTGTGGTATTCCTCCCATGTGCTCATCAGGTTGTTTGCACAACATGTAATGAGCTCCATGAAAAACAGGGTATGCAAGATTGTCCTTCTTGCAGGAGCCCCATCCAGCGGCGTATTCCTGCCCGTTATAACCGGATTTAA 2643 0.4306 MVSLVASGSCQMSPSVVQEKGSRNKRKFRADPPLGEPNKIIPASQHDGLSYEFSAEKFEISTGHVQATACDLCSINHDYSDGLKLDLGLYSPGSSCEVGPCQPKEEVEADEYNDADWSDLTEAQLEELVLSNLDAIFKNAIREIVAHGYTEEVASKAVLKSGICYGCKDTVSNIVDNTLPFLRKGQEDYPSREHYFKDLVQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVAHACAMDCGPLSSLGSDGTADGCSSNQTELKPKAETRVPDLSLPSPCKPIPAVSHTPQSKKSLVAGIPGVNNFKNSRSIGSPSENEGVSCGPLCVDKAFNATGTPQSPLLEEKCGNVRKVHSGSSKRDYILRQKSFHVEKSYRTYGSKGSSRGGKLSSLSGLILDKKLKSVSESSTISLKSASLQISKATGVDVTQDNLDASFSPNPGPSTPAAFSVDSADAVFRSFNTSFSVHAANNIPSFSSPGSLSLTDTDLSLSLSSKTMSTAPVCAPNSCHVGIPYDKSQGQWVPQDKKDEMILKLVPRVRELQNQLQEWNEWANQKVMQAARRLSKDKAELKTLRQEKEEVERLKTEKRSLEENTVKKLSEMENALCKASGQVQRANAAVQKLKVENAALRIEMEAAKLRASETALTCQEVSRREKKTQLQFQSWEKQKFLLQEELVSEKRKLAQLVQESEQVKMQQEQVQARWQQEAKAKEELLLQVSAIRKEREQIEELAKSKEDMIKSKAERNLQRYKDDILKLEKEIGQLRLKSDSSKIAALRMGIGRDASRSADTKNGSALEEPQTSFISELVSDYSVTGGVERERECVMCLSEELSVVFLPCAHQVVCTTCNELHEKQGMQDCPSCRSPIQRRIPARYNRI 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1518 880 Pfam Family of unknown function (DUF6592) 132 243 IPR046527 -
Lal19g1518 880 Pfam Zinc finger, C3HC4 type (RING finger) 823 871 - -
Lal19g1518 880 PANTHER OS05G0141500 PROTEIN 5 878 IPR046934 -
Lal19g1518 880 SUPERFAMILY RING/U-box 820 872 - -
Lal19g1518 880 Coils Coil 714 770 - -
Lal19g1518 880 PANTHER OS05G0141500 PROTEIN 5 878 - -
Lal19g1518 880 Coils Coil 560 604 - -
Lal19g1518 880 Coils Coil 679 706 - -
Lal19g1518 880 Coils Coil 616 643 - -
Lal19g1518 880 MobiDBLite consensus disorder prediction 259 278 - -
Lal19g1518 880 MobiDBLite consensus disorder prediction 1 19 - -
Lal19g1518 880 MobiDBLite consensus disorder prediction 1 41 - -
Lal19g1518 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 812 875 IPR013083 -
Lal19g1518 880 ProSiteProfiles Zinc finger RING-type profile. 826 866 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1518 Lal-Chr19 17487252 17491443 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1518 - - gsj:114420104 1194.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1518 19 17487252 17491443 Lal19g1518 19 17487252 17491443 ECH
Lal14g1957 14 18689822 18694114 Lal19g1518 19 17487252 17491443 LSH
Lal7g1451 7 19349785 19354084 Lal19g1518 19 17487252 17491443 LSH
Lal19g1518 19 17487252 17491443 Lal3g0323 3 2105368 2108291 PCT
Lal3g0323 3 2105368 2108291 Lal19g1518 19 17487252 17491443 PCT