Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1509 ATGACGTCAATTCCACCACTCTCTGAAATCCCAATACCCTCACCTTCATCATCAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAGGGTAACAACAACAACAACACCAACAATAACTCCAGAAAACGAGAACGTGAAAGGTGTATGAAGATGAGCCACATGTACAATCAACTTCAGGCCACTGTCCCTGGTCTCTTCCCCAAGGCTTCAAGGGAAATGATTGTAAGCAAAACAATTGAGTACATTAAGGAGCTTGAGGACAAAAAGCAAAAGCTAGAGGAACTGAAGGACTCAATGCTTCAATCTACTACAACTAACACCAATTGCTCTCTCAAGCTTTATCTCTCAACTAATAATGTTGCCTTCTTTGGTATTCAATTACACCATCAACCTGCTTCCATCACACTCATTTTCAAGGTCTTCTTCAAACACCACGCCCAAATCTTGTCTGCTAATGCCTCTGTTAATCAAGGGACTTTGATATTGGCAATAACAGCTTTGGTGCAAAATGGTACCCTTGAAATTATTAAGAGAGAAATTATGAATTTTTAG 555 0.3946 MTSIPPLSEIPIPSPSSSTSSSSSSSSSSKGNNNNNTNNNSRKRERERCMKMSHMYNQLQATVPGLFPKASREMIVSKTIEYIKELEDKKQKLEELKDSMLQSTTTNTNCSLKLYLSTNNVAFFGIQLHHQPASITLIFKVFFKHHAQILSANASVNQGTLILAITALVQNGTLEIIKREIMNF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1509 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 104 IPR036638 GO:0046983
Lal19g1509 184 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 182 - -
Lal19g1509 184 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 182 - -
Lal19g1509 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 86 IPR011598 GO:0046983
Lal19g1509 184 Coils Coil 76 106 - -
Lal19g1509 184 SMART finulus 42 92 IPR011598 GO:0046983
Lal19g1509 184 MobiDBLite consensus disorder prediction 1 44 - -
Lal19g1509 184 MobiDBLite consensus disorder prediction 1 39 - -
Lal19g1509 184 Pfam Helix-loop-helix DNA-binding domain 41 87 IPR011598 GO:0046983
Lal19g1509 184 Gene3D - 28 113 IPR036638 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1509 13 105 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 34.694 8.74e-09 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal19g1509 HLH 7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1509 - - lang:109353111 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1509 19 17434959 17436231 Lal19g1509 19 17434959 17436231 ECH