Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1507 ATGGAAGGCGAACGTGTTGATTTTGGAAAGATGGGATATGGGTGCAAGCATTACAGGAGAAGATGCAGGATTAGAGCACCCTGTTGCAATGAGATCTACTCATGTCGTCATTGTCATAATGATGCTACGAGCATGTTGAAGAACCCCTTTGATCACCACGACCTTGTTCGCCAAGATGTGAAACAAGTTATTTGTTCAGTTTGTGACACAGAGCATGAAGTTGCTCAAGTTTGCACAAACTGTGGTGTCAAAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTTGATGATGATACAGAGAAACAACAGTTTCATTGTGATGAATGTGGGATCTGCAGGGTTGGTGGACGAGATAACTATTTCCACTGCAAGAAGTGCGGGTCTTGCTACTCAGTTGGTCTGCGTGATAATCATTTATGTGTTGAGAACTCCATGAGGCATCACTGTCCCATTTGTTATGAGTACCTTTTTGACTCATTAAAAGATACTATTGTTATGAAATGTGGTCACACAATGCACTCTGAATGTTACCAAGAGATGGTAAAACGTGACAAGTACTGTTGTCCCATATGCTCCAAGTCGGTCATTGACATGTCTAGGATGTGGAAGAGAATTGATGAAGAGATTGAAGCCACTGTCATGCCTGACGATTATCGATTGAGGAAGGTGTGGATTCTATGCAATGACTGTAATGACACAACTGAAGCTTACTTCCACATTCTTGGGCAAAAATGTGGTCATTGCAGATCATATAATACTCGTGCAATTGCTCCCCCTGTTCTTCCTCAATAA 795 0.4151 MEGERVDFGKMGYGCKHYRRRCRIRAPCCNEIYSCRHCHNDATSMLKNPFDHHDLVRQDVKQVICSVCDTEHEVAQVCTNCGVKMGEYFCNICKFFDDDTEKQQFHCDECGICRVGGRDNYFHCKKCGSCYSVGLRDNHLCVENSMRHHCPICYEYLFDSLKDTIVMKCGHTMHSECYQEMVKRDKYCCPICSKSVIDMSRMWKRIDEEIEATVMPDDYRLRKVWILCNDCNDTTEAYFHILGQKCGHCRSYNTRAIAPPVLPQ 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1507 264 ProSiteProfiles Zinc finger CHY-type profile. 8 83 IPR008913 GO:0008270
Lal19g1507 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 222 IPR013083 -
Lal19g1507 264 Pfam CHY zinc finger 15 95 IPR008913 GO:0008270
Lal19g1507 264 ProSiteProfiles Zinc finger CTCHY-type profile. 85 149 IPR017921 -
Lal19g1507 264 ProSiteProfiles Zinc finger RING-type profile. 150 193 IPR001841 -
Lal19g1507 264 SUPERFAMILY CHY zinc finger-like 12 84 IPR037274 GO:0008270
Lal19g1507 264 Gene3D - 223 259 - -
Lal19g1507 264 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 4 264 - -
Lal19g1507 264 Pfam Ring finger domain 149 192 IPR001841 -
Lal19g1507 264 SMART ring_2 150 192 IPR001841 -
Lal19g1507 264 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 4 264 - -
Lal19g1507 264 Pfam Zinc-ribbon 197 255 IPR039512 -
Lal19g1507 264 SUPERFAMILY RING/U-box 149 200 - -
Lal19g1507 264 SUPERFAMILY Zinc hairpin stack 86 143 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1507 Lal-Chr19 17427566 17430784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1507 7 263 C2H2 Transcription Factor Family AT3G18290 39.924 9.52e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1507 K10144 - gmx:100792038 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1507 19 17427566 17430784 Lal19g1507 19 17427566 17430784 ECH
Lal14g1554 14 16205707 16215150 Lal19g1507 19 17427566 17430784 LSH
Lal7g0950 7 15841718 15852962 Lal19g1507 19 17427566 17430784 LSH
Lal19g1507 19 17427566 17430784 Lal5g1397 5 16627042 16633325 PCT
Lal19g1507 19 17427566 17430784 Lal11g0489 11 3809248 3812833 PCT
Lal5g1397 5 16627042 16633325 Lal19g1507 19 17427566 17430784 PCT
Lal11g0489 11 3809248 3812833 Lal19g1507 19 17427566 17430784 PCT