Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1505 ATGGGGAGGCCGTCCAAGTCAGAAGCTTCTTCTTCCGACGAACCACTCTCCGATTCCGAGGAGGAACAAAACCATCACATCAACGACCAAGACGACGATGACGAGCTCCAAGCGGTGGCTTGTTCTCCTAGCTCCGGCGATGATGATAATCTTCCCGATGTAGATCTAGATGCTGACGACAATGAACCGGATGAAGGTAATGTTGTTCCTGAAATCAGCCGGCGTGAGAAGGCCAGATTAAGAGAGATGCAACAAATTAAGAAGCAGAAGATTCAGGAGATGTTGGATGCACAAAATGCAGCTATTGATTCTGATATGAACAATAAGGGAAAAGGCCGATTGAAGTATCTCTTACAGCAAACTGAGCTGTTTGCTCATTTTGCCAAAGGAGATCAGTCTTCCTCTCAAAAGAAGACAAAGGGAAGGGGACGGCATGCATCAAAAGTTACCGAAGAAGAGGAAGATGAGGAATATCTCAAAGAAGAAGAAGATGGTTTAGCAAGCACACGGCTCTTGACACAACCATCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCAGGGCTAAATTGGCTCATACGATTATATGAGAATGGTATAAATGGAATTCTTGCAGATGAAATGGGGCTTGGTAAAACCTTACAAACTATATCTTTATTGGGCTACTTACATGAGTTCAGAGGAATAACAGGACCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTGTGTTGCGTGCAGTGAAGTTCCTGGGTAACCCTGATGAAAGGAGGCATATAAGGGAGAACTTGTTGGTTGCTGGGAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGCCGATTTAGTTGGCGTTACATAGTTATTGATGAAGCACATCGAATCAAGAATGAGAATTCCCTTCTGTCTAAAACAATGAGGCTATACAATACAAACTATCGACTCCTTATAACTGGCACACCACTGCAGAACAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTCTGCCTGAAGTATTTAGTTCTGCTGAAACTTTTGATGAGTGGTTTCAAATTTCTGGTGAAAATGACCAACAGGAAGTTGTTCAACAACTACACAAAGTACTCCGCCCATTTCTTCTTCGAAGGTTGAAGTCTGATGTTGAGAAAGGGTTGCCACCAAAAAAGGAAACCATTCTCAAAGTAGGCATGTCACAAATGCAGAAACAGTATTATAAGGCATTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAGCTACGTAAATGTTGTAATCACCCATATCTCTTCCAAGGCGCTGAACCAGGCCCTCCATATACAACAGGAGATCATCTCATTACGAATGCTGGTAAAATGGTTCTTATGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCAAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTGGAGGATTATTTGATGTTTCGCGGTTATCAATATTGTCGCATAGATGGCAATACTGGTGGAGAAGATCGTGATGCTTCCATTGAGGCTTATAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACGCGGGCTGGAGGTCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTCTATGATAGTGACTGGAATCCACAAGTTGACCTGCAAGCTCAGGACCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACTGAGTATACTATTGAGGAAAAGGTCATTGAAAGGGCTTACAAAAAGCTTGCTCTTGATGCTCTAGTGATTCAACAAGGGCGATTAGCTGAGCAGAAGAGTAAGGATTTTCAGCATGATTTTTCTTATCTCTTACTTGCAAGAATTATGCATTTTATAATATGGGGAAATTGGTTTATGTGTGCAGCTGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCGGAAATGGTTTTTAGTTCCAAGGACAATACAATTACAGATGAGGATATAGACAGAATTATTGCTAAAGGAGAGGAAGCAACTGCTGAACTCGATGCTAAGATGAAGAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTACGATTTTGATGACGAGAAGGATGAGAACAAATTTGATTTCAAAAAAATCGTGAGTGAGAACTGGGTCGAGCCGCCAAAAAGAGAGCGGAAGCGCAACTATTCAGAGTCTGAGTACTTCAAGCAAACATTGCGCCAAGGTGGTCCTACTAAACCGAAGGAGCCCCGTATTCCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAACACATCAGAAGAATCAGTTACAAGACTCAATAGATGTTGATGAACCTGAAGAGATGGGATATCCATTGACTGTTGAAGAGTCGGAAGAAAAGGAGCACCTGCTTGAGAAGGGATTTTCATCATGGACTCGGAAGGATTTTAATACTTTTATTAGGGCTTGTGAAAAGTATGGCCGAAATGATATAAAAGGTATTGCTTCTGAGATGGAAGGGAAAGCAGAGGAGGAAGTTGAAAGATATGCCAAAGTCTTCAAAGAAAGATACAAGGAGTTAAGTGATTATGATAGAATTATTAAAAATATTGAAAGAGGGGAGGCAAGAATATCTCGGAAAGATGAGATCATGAAAGCTATTGGAAAGAAGTTGGACCGCTACAAGAACCCATGGCTAGAGTTGAAAATTCAATATGGGCAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGTTATGGGAATTGGGATGAATTGAAGGCAGCATTTAGAACATCACCCTTATTTCGTTTTGATTGGTTTGTGAAGTCTCGCACAACACAGGAACTAACAAGGAGGTGTGACACCCTCATCAGGCTGGTAGAGAAGGAAAACCAAGAATATGATGAAAGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCCAAGAGTATGACAACCCCATCAAAGCGTGCATTGCCAAGACAAACGGAAAGTCCTTCTCAGAAGAAACGCAAACAGTTAACTATGGATGCCTATGTAACCCCGAGGAGAAAATAA 3255 0.4114 MGRPSKSEASSSDEPLSDSEEEQNHHINDQDDDDELQAVACSPSSGDDDNLPDVDLDADDNEPDEGNVVPEISRREKARLREMQQIKKQKIQEMLDAQNAAIDSDMNNKGKGRLKYLLQQTELFAHFAKGDQSSSQKKTKGRGRHASKVTEEEEDEEYLKEEEDGLASTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRHIRENLLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIVIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLMDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKSKDFQHDFSYLLLARIMHFIIWGNWFMCAAVNKDELLQMVRFGAEMVFSSKDNTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWVEPPKRERKRNYSESEYFKQTLRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLQDSIDVDEPEEMGYPLTVEESEEKEHLLEKGFSSWTRKDFNTFIRACEKYGRNDIKGIASEMEGKAEEEVERYAKVFKERYKELSDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTTPSKRALPRQTESPSQKKRKQLTMDAYVTPRRK 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1505 1084 MobiDBLite consensus disorder prediction 18 33 - -
Lal19g1505 1084 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 359 IPR014001 -
Lal19g1505 1084 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 7 643 - -
Lal19g1505 1084 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 661 1080 - -
Lal19g1505 1084 SMART ultradead3 178 370 IPR014001 -
Lal19g1505 1084 Coils Coil 1012 1046 - -
Lal19g1505 1084 Gene3D - 403 724 IPR027417 -
Lal19g1505 1084 Coils Coil 80 100 - -
Lal19g1505 1084 Pfam HAND 775 855 IPR015194 GO:0003677|GO:0006338|GO:0031491
Lal19g1505 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 643 IPR027417 -
Lal19g1505 1084 MobiDBLite consensus disorder prediction 128 162 - -
Lal19g1505 1084 PANTHER SNF2/RAD54 HELICASE FAMILY 661 1080 - -
Lal19g1505 1084 PANTHER SNF2/RAD54 HELICASE FAMILY 7 643 - -
Lal19g1505 1084 SMART sant 862 911 IPR001005 -
Lal19g1505 1084 SMART sant 964 1025 IPR001005 -
Lal19g1505 1084 Gene3D ISWI, HAND domain 763 861 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lal19g1505 1084 CDD SANT 865 909 IPR001005 -
Lal19g1505 1084 SUPERFAMILY Homeodomain-like 865 915 IPR009057 -
Lal19g1505 1084 SUPERFAMILY Homeodomain-like 917 1039 IPR009057 -
Lal19g1505 1084 MobiDBLite consensus disorder prediction 1 76 - -
Lal19g1505 1084 Pfam Helicase conserved C-terminal domain 487 597 IPR001650 -
Lal19g1505 1084 Gene3D - 950 1053 - -
Lal19g1505 1084 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 774 864 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lal19g1505 1084 Gene3D - 862 915 - -
Lal19g1505 1084 CDD DEXHc_SMARCA1_SMARCA5 179 399 IPR044754 GO:0005524
Lal19g1505 1084 Pfam SNF2-related domain 195 462 IPR000330 GO:0005524|GO:0140658
Lal19g1505 1084 SMART helicmild6 513 597 IPR001650 -
Lal19g1505 1084 MobiDBLite consensus disorder prediction 50 66 - -
Lal19g1505 1084 MobiDBLite consensus disorder prediction 1033 1050 - -
Lal19g1505 1084 Gene3D iswi atpase 917 949 - -
Lal19g1505 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 397 IPR027417 -
Lal19g1505 1084 ProSiteProfiles SANT domain profile. 861 913 IPR017884 -
Lal19g1505 1084 CDD SF2_C_SNF 483 608 - -
Lal19g1505 1084 MobiDBLite consensus disorder prediction 1033 1084 - -
Lal19g1505 1084 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 487 638 IPR001650 -
Lal19g1505 1084 MobiDBLite consensus disorder prediction 1062 1084 - -
Lal19g1505 1084 Pfam SLIDE 919 1029 IPR015195 GO:0003677|GO:0005634|GO:0006338
Lal19g1505 1084 Gene3D - 183 398 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1505 Lal-Chr19 17409883 17418044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1505 203 624 RAD5 or RAD16-like Gene Family AT1G02670 26.535 1.17e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal19g1505 SNF2_N 9.3e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1505 K11654 - gmx:100791510 1852.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1505 19 17409883 17418044 Lal19g1505 19 17409883 17418044 ECH
Lal19g1505 19 17409883 17418044 Lal5g1395 5 16600241 16608362 PCT
Lal19g1505 19 17409883 17418044 Lal11g0491 11 3825373 3834876 PCT
Lal5g1395 5 16600241 16608362 Lal19g1505 19 17409883 17418044 PCT
Lal11g0491 11 3825373 3834876 Lal19g1505 19 17409883 17418044 PCT