Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1503 ATGGAACGGTACGGACACCAAAATGAAGGGTCACAGTCTGATCCGTCACCGGAATGGGGTTATGAAGAGTCATCGTTGCAAGGTGTTGAATCATCATATCCTCAGAGACCCGATGAGGCTGATTGTATCTACTTTCTCAAAAACGGTTTTTGTGGATATGGCTCTCGATGCCGCTTCAATCATCCTCATCACCGTGCCGGAGTAGTTACTGGAGCTGTAAGGACTGGAGTAGGGGAGCACCCTGAACGACTTGGTCAGCCTTTGTGCCAGTATTATATGAGGATGGGATCATGCAAATTTGGCCCTTCCTGCAAGTACCACCATCCAAGGCAGGGAGCAGGCATTGCTGCCCCAGTGTCACTGAATTATTATGGCTATCCATTGCGAACGAAGTTTGCTCTGGACTTTGTGTTTTGTGAACAAGAACAGGGCGAGAAAGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTACAACTTGTAAATTCCATCATCCTCAGCCTGCAGGAGTCCAAATTCAAGCGTCATCATCTGTTCCCCCAGTTTCCCCTCTGCCAATGCCTATACCTTCAACGTTATACCCAACTGTGCAGCCTCCATCTGGTCCCTCATCACAACAATATGGTGTACTGGTTGCAAGGCCACCTTTGCTACCTGGCTCATTAGTTCAGGGCCCCTATGGGCCGATGATGGTGTCCCCTACCATGGTCCCCTTCTCTGGCTGGGGTCCTTATCAGGGTCCTGCAGTAAGCCCAGTACGTCCTTCTAGTACTCCGTCTAATGTTGGTTCAACACAGTTCTATGGGATAACCCAGCTACCTTCATCGACAACTACCTATGCTGGGCCTTATCAAGTTTCTGGTTCCTTAATTGGTCCTTCTGGCAGTGGTCAGAAGGAGCAGTCATTGCCAGAAAGGCCAGATCAACCAGAATGTCAGTATTATATGAAAACAGGGGAATGTAAATTTGGTCCATCATGTAGATATAATCATCCAGCAGACATGAGTGCTCCAAAAGTGAATGTCTTCCTTAGTCCTGTGGGTCTTCCTTTGCGCCCGGGGGCATCAGTTTGCACTCATTATACCCAACGTGGTGTTTGTAAGTTTGGTCCTGCATGCAAGTTTGATCATCCTATGGGATCATTGAGTTATAGTCCTTCCGCTTCCTCCCTGTCTGACATGCCAGTTGCACCCTATCCTGTTGGTTCCTCACTTGGCACTCTTGCCTCATCATCTTCATCATCAGAGTTGCGACCTGATCTTGCCTCTGGATCCAGCAAGGAGCCTGGTTCATACAGAATGTCTTCATCAATGAGCACATCAACTGGATCAGTTGGCTTGACCTTGTCAACTGGTGGGCCAATTTCTCAATCAGTCAACCAACCATCTGTTCAAAGTTCCAGTCCTTTATCAACTACCACTGCTTCCACAAATAGCACCGTCTCTCACACCTCAAGCTAA 1467 0.4778 MERYGHQNEGSQSDPSPEWGYEESSLQGVESSYPQRPDEADCIYFLKNGFCGYGSRCRFNHPHHRAGVVTGAVRTGVGEHPERLGQPLCQYYMRMGSCKFGPSCKYHHPRQGAGIAAPVSLNYYGYPLRTKFALDFVFCEQEQGEKECSYYVKTGQCKFGTTCKFHHPQPAGVQIQASSSVPPVSPLPMPIPSTLYPTVQPPSGPSSQQYGVLVARPPLLPGSLVQGPYGPMMVSPTMVPFSGWGPYQGPAVSPVRPSSTPSNVGSTQFYGITQLPSSTTTYAGPYQVSGSLIGPSGSGQKEQSLPERPDQPECQYYMKTGECKFGPSCRYNHPADMSAPKVNVFLSPVGLPLRPGASVCTHYTQRGVCKFGPACKFDHPMGSLSYSPSASSLSDMPVAPYPVGSSLGTLASSSSSSELRPDLASGSSKEPGSYRMSSSMSTSTGSVGLTLSTGGPISQSVNQPSVQSSSPLSTTTASTNSTVSHTSS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1503 488 Gene3D - 13 68 - -
Lal19g1503 488 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 479 - -
Lal19g1503 488 MobiDBLite consensus disorder prediction 430 488 - -
Lal19g1503 488 SUPERFAMILY CCCH zinc finger 84 111 IPR036855 GO:0046872
Lal19g1503 488 MobiDBLite consensus disorder prediction 289 305 - -
Lal19g1503 488 ProSiteProfiles Zinc finger C3H1-type profile. 36 64 IPR000571 GO:0046872
Lal19g1503 488 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Lal19g1503 488 MobiDBLite consensus disorder prediction 289 309 - -
Lal19g1503 488 MobiDBLite consensus disorder prediction 8 32 - -
Lal19g1503 488 MobiDBLite consensus disorder prediction 1 33 - -
Lal19g1503 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 38 62 IPR000571 GO:0046872
Lal19g1503 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 169 IPR000571 GO:0046872
Lal19g1503 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 110 IPR000571 GO:0046872
Lal19g1503 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 310 334 IPR000571 GO:0046872
Lal19g1503 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 358 381 IPR000571 GO:0046872
Lal19g1503 488 Gene3D - 82 180 - -
Lal19g1503 488 Gene3D - 303 392 - -
Lal19g1503 488 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Lal19g1503 488 ProSiteProfiles Zinc finger C3H1-type profile. 354 382 IPR000571 GO:0046872
Lal19g1503 488 MobiDBLite consensus disorder prediction 409 423 - -
Lal19g1503 488 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Lal19g1503 488 SMART c3hfinal6 144 169 IPR000571 GO:0046872
Lal19g1503 488 SMART c3hfinal6 308 335 IPR000571 GO:0046872
Lal19g1503 488 SMART c3hfinal6 36 63 IPR000571 GO:0046872
Lal19g1503 488 SMART c3hfinal6 354 381 IPR000571 GO:0046872
Lal19g1503 488 SUPERFAMILY CCCH zinc finger 312 336 IPR036855 GO:0046872
Lal19g1503 488 SUPERFAMILY CCCH zinc finger 145 170 IPR036855 GO:0046872
Lal19g1503 488 MobiDBLite consensus disorder prediction 409 488 - -
Lal19g1503 488 SUPERFAMILY CCCH zinc finger 357 384 IPR036855 GO:0046872
Lal19g1503 488 PANTHER PROTEIN PHOSPHATASE RELATED 1 479 - -
Lal19g1503 488 SUPERFAMILY CCCH zinc finger 38 65 IPR036855 GO:0046872
Lal19g1503 488 ProSiteProfiles Zinc finger C3H1-type profile. 308 336 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1503 Lal-Chr19 17401376 17406689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1503 1 463 C2H2 Transcription Factor Family AT5G18550 51.335 1.09e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal19g1503 zf-CCCH 5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1503 - - gmx:100789405 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1503 19 17401376 17406689 Lal19g1503 19 17401376 17406689 ECH
Lal14g1947 14 18650193 18654488 Lal19g1503 19 17401376 17406689 LSH
Lal7g1429 7 19224568 19228641 Lal19g1503 19 17401376 17406689 LSH
Lal19g1503 19 17401376 17406689 Lal5g1388 5 16542064 16551452 PCT
Lal19g1503 19 17401376 17406689 Lal3g0346 3 2269292 2279740 PCT
Lal19g1503 19 17401376 17406689 Lal11g0493 11 3851814 3862454 PCT
Lal5g1388 5 16542064 16551452 Lal19g1503 19 17401376 17406689 PCT
Lal3g0346 3 2269292 2279740 Lal19g1503 19 17401376 17406689 PCT
Lal11g0493 11 3851814 3862454 Lal19g1503 19 17401376 17406689 PCT