Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1501 ATGTCTATTATGTTAAACTCTCATCGCTTCAGATCCATTCTCTACCTCACCCACCTCTCTCTCTCACCAATCCCTAAATCACAATGTTACCTTCACCCTTCACCTCTCACTCTCAACTTCTTCTCCACTGCTTCCAATCACAAAGCTTTCACCGTTCCCTATCTCATCAGCAATTTTGGTTTTTCACCGGAAATCGCTCTCAAAACCTCCAAGCGAGTTCATTTCGATAACCCCCAAAAACCTGATTCTGTTATTGCCTTCTTAAAAACCCACGGTTTCTCTGATACCCAGATAAGCAGCGTCATGCGAAGGGCACCAGAGCTTCTCACATGCGATCCCATCAAAAGGGTATTGCCAAAGTTTCAATTTTTAATCTCCAAAGGTGCTTCCCCTTCTGATGTTGTTGCCACCGTGTCACGCAGCCCTGCTTTTCTTCGTAAGAGCCTTGACAATCACATAATCCCTGCTTTTGAATTGGTAAGACGATTCAGCCCCTCTGATGAAAGAGCCATTGCTTGTGTTATTGCTTCTCCTACTTCAATTTCTGATGCACGTGTGCAGCACAATGTGAACATGTTGATTGATGAAGGTGTCACACACTCCAGCATTTACCATTTGTTTCGTACTAGGCCTACTGTACTATGCTCTAATGATTTAGAAAAAGTCTTGGATGAAGTCAAAAAAATGGGTTTTAATCCTTCAAAGACAAATTTTAGTGTTGCCATATTGGCCAAAAAGGCTATTACTAAAGCTCAATGGGATGCTAAAATTGATGCCTTTAAGACATGGGGTTGGTCTGAAAAAGAAATTTTAGAAGCCTTTAAGAGGTTGCCACAATTTATGCTACGATCTCCGGATAAGCTCAATGCAGTGATAAGCTTTTGGGTGGGTCAGCTTGGTTGGGATCCTTCGACGCTTCTCAGAGCACCAGTGATTTTTGGGTATAGCTTGGAGAAAAGGCTCATCCCAAGGGCTTCTGTTGTCAAGGAACTTCTCTCCAAAGGTTTGATGAGAAAGAATGCTAATTTAGTTACACCATTTGGTTTATCTGAGCATATGTTCCTGGAGAAGTTTGTGAGATGCCTTGATGAGGAGAATGCATCTGGACTATTAAAGCTATATCAGAAAGAACTGCAGCAAGTGTCAGTTGATTAA 1155 0.4199 MSIMLNSHRFRSILYLTHLSLSPIPKSQCYLHPSPLTLNFFSTASNHKAFTVPYLISNFGFSPEIALKTSKRVHFDNPQKPDSVIAFLKTHGFSDTQISSVMRRAPELLTCDPIKRVLPKFQFLISKGASPSDVVATVSRSPAFLRKSLDNHIIPAFELVRRFSPSDERAIACVIASPTSISDARVQHNVNMLIDEGVTHSSIYHLFRTRPTVLCSNDLEKVLDEVKKMGFNPSKTNFSVAILAKKAITKAQWDAKIDAFKTWGWSEKEILEAFKRLPQFMLRSPDKLNAVISFWVGQLGWDPSTLLRAPVIFGYSLEKRLIPRASVVKELLSKGLMRKNANLVTPFGLSEHMFLEKFVRCLDEENASGLLKLYQKELQQVSVD 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1501 384 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 24 379 - -
Lal19g1501 384 Pfam mTERF 253 354 IPR003690 GO:0003690|GO:0006355
Lal19g1501 384 Pfam mTERF 86 232 IPR003690 GO:0003690|GO:0006355
Lal19g1501 384 SMART mt_12 135 166 IPR003690 GO:0003690|GO:0006355
Lal19g1501 384 SMART mt_12 204 232 IPR003690 GO:0003690|GO:0006355
Lal19g1501 384 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Lal19g1501 384 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Lal19g1501 384 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Lal19g1501 384 PANTHER CGI-12 PROTEIN-RELATED 24 379 IPR003690 GO:0003690|GO:0006355
Lal19g1501 384 Gene3D Transcription termination factor 3, mitochondrial 180 367 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1501 Lal-Chr19 17387226 17388380 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lal19g1501 mTERF 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1501 K15032 - gmx:102666622 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1501 19 17387226 17388380 Lal19g1501 19 17387226 17388380 ECH
Lal7g1425 7 19185894 19187012 Lal19g1501 19 17387226 17388380 LSH