Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1490 ATGGCAGACAAGTCTGAAGTTTTGGAGGCTGTGTTGAAGGAAGCCGTGGATTTGGAAAACATACCAATTGAGGAGGTTTTTGAGAATCTGAGATGTAGCAAAGAAGGTCTTACAAGTCAGGCTGCTGAGGAAAGATTGATTATTTTTGGCCACAACAAGCTTGAGGAGAAAAAAGAGAGGAAATTTTTGAAGTTCTTGGGATTTATGTGGAATCCTCTCTCATGGGTTATGGAGGTAGCTGCTATAATGGCTATTGCACTTGCAAATGGAGGGGGGAAGCCTCCTGACTGGCAAGACTTTGTGGGTATCATTACCTTGCTTGTTATCAATTCAACTATCAGTTTCATAGAGGAGAATAATGCTGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTCGCTCCAAAAGCAAAGTCTGCACTTACAGGCGAGTCCCTGCCAGTGACAAAGAGCCCCGGTGACGGTGTGTACTCTGGCTCCACCTGCAAACAAGGAGAGATTGAAGCTATAGTCATTGCTACTGGTGTTCACACCTTCTTTGGGAAAGCTGCTCACCTCGTGGATACCACCAATCAAGTTGGTCACTTTCAAAAGATCCTAAATCTTGCCCACAATAAGGTCGACATTGAACGCAGAGTTCATGCAGTGATAGATAAGTTTGCAGAGCGTGGTTTACGATCTCTTGCTGTAGCATACCAGGAAGTTCCAGATGGAAGGAAAGAGAGTGCAGGGGGCCCATGGCTGTTAACTGGCCTTCTTCCTCTGTTTGATCCACCTAGGCATGATAGTGCAGAAACAATACGCAGGGCACTAAACCTTGGAGTAAATGTCAAAATGATCACAGGGGATCAACTAGCTATTGGAAAGGAAACAGGCCGTCGCTTGGGAATGGGTACCAACATGTATCCTTCTTCTGCTTTACTTGGGCAGGATAAGGATGAATCTATTGCTTCCTTACCCGTTGATGAACTAATAGAAAAAGCTGATGGGTTCGCTGGTGTTTTTCCTGAGCACAAGTATGAGATTGTGAAACGCTTACAAGCTAGGAAACATATATGTGGAATGACTGGTGATGGAGTGAATGATGCACCTGCACTAAAAAAGGCAGACATTGGTATAGCTGTTGCAGATGCTACTGATGCTGCTCGCAGTGCATCTGATATTGTTTTAACAGAGCCTGGCCTTAGTGTGATTATAAGTGCTGTTTTGACAAGCCGAGCTATCTTCCAGAGAATGAAAAATTATACAATTTATGCTGTCTCAATTACAATTCGTATCGTTCTTGGTTTCATGTTGCTGGCTCTGATATGGAAGTTTGACTTTCCACCTTTTATGGTGCTCATCATCGCCATCCTAAATGATGGTACCATTATGACAATATCAAAAGATCGGGTAAAACCATCACCACTCCCAGATAGCTGGAAGCTGGCAGAGATCTTTACTACCGGTGTTGTGCTTGGAAGTTACTTAGCAATGATGACAGTCATATTCTTTTGGGCAGCTTACAAAACAGATTTCTTCCCTGCAATCATTGATTTATCTTGCCTGCTGTGTTTTCAGCGAGTGTTTGGTGTCTCGAGTCTTGAAAAAACTGCCCATGATGATTTCCGAAAACTTGCCTCTGCAATTTATCTTCAAGTGAGCACAATTAGTCAGGCTCTTATATTTGTAACTCGGTCTCGAGGTTGGTCATATGTTGAGCGTCCTGGTTTATTGCTGGTGTTTGCTTTTCTTGTTGCTCAGCTGATTGCCACTTTGATTGCTGTATATGCAAACTGGAGCTTCGCTGCTATCGAAGGAATAGGTTGGGGCTGGGCTGGTGTAATATGGTTATATAACATAGTATTCTACATTCCACTTGATATCATTAAGTTTATGATCCGCTACACATTGAGTGGGAGAGCTTGGGATCTTGTCATTGAGCAAAGGATTGCATTCACAAGGCAAAAGGACTTCGGCAAGGAACAAAGGGAACTTCAATGGGCACATGCACAAAGAACACTGCATGGATTACAACCACCTGACAGCAAGTTCACTGAGCGCACACATGTCACCGAACTCAATCAAATGGCTGAAGAAGCTAAAAGGAGAGCCGAAATCGCAAGGTTGAGAGAACTTCATACACTGAAGGGTCATGTAGAGTCAGTTGTGAGACTGAAGGGGCTTGACATCGACACAATTCAGCAATCATACACAGTCTGA 2199 0.4375 MADKSEVLEAVLKEAVDLENIPIEEVFENLRCSKEGLTSQAAEERLIIFGHNKLEEKKERKFLKFLGFMWNPLSWVMEVAAIMAIALANGGGKPPDWQDFVGIITLLVINSTISFIEENNAGNAAAALMARLAPKAKSALTGESLPVTKSPGDGVYSGSTCKQGEIEAIVIATGVHTFFGKAAHLVDTTNQVGHFQKILNLAHNKVDIERRVHAVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWLLTGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIASLPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGSYLAMMTVIFFWAAYKTDFFPAIIDLSCLLCFQRVFGVSSLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGLLLVFAFLVAQLIATLIAVYANWSFAAIEGIGWGWAGVIWLYNIVFYIPLDIIKFMIRYTLSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDSKFTERTHVTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQSYTV 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1490 732 Gene3D - 192 255 IPR023299 GO:0000166
Lal19g1490 732 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Lal19g1490 732 Pfam E1-E2 ATPase 137 201 - -
Lal19g1490 732 PRINTS H+-transporting ATPase (proton pump) signature 212 230 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal19g1490 732 PRINTS H+-transporting ATPase (proton pump) signature 327 343 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal19g1490 732 PRINTS H+-transporting ATPase (proton pump) signature 355 371 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal19g1490 732 PRINTS H+-transporting ATPase (proton pump) signature 386 411 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal19g1490 732 PRINTS H+-transporting ATPase (proton pump) signature 543 564 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal19g1490 732 PANTHER PLASMA MEMBRANE ATPASE 1 137 199 - -
Lal19g1490 732 PANTHER PLASMA MEMBRANE ATPASE 1 3 137 - -
Lal19g1490 732 PANTHER PLASMA MEMBRANE ATPASE 1 197 712 - -
Lal19g1490 732 SUPERFAMILY Calcium ATPase, transduction domain A 137 186 IPR008250 -
Lal19g1490 732 Gene3D - 140 190 - -
Lal19g1490 732 SUPERFAMILY HAD-like 247 401 IPR036412 -
Lal19g1490 732 Pfam haloacid dehalogenase-like hydrolase 248 369 - -
Lal19g1490 732 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 330 443 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal19g1490 732 Coils Coil 683 703 - -
Lal19g1490 732 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 630 IPR023298 -
Lal19g1490 732 PANTHER CALCIUM-TRANSPORTING ATPASE 137 199 - -
Lal19g1490 732 PANTHER CALCIUM-TRANSPORTING ATPASE 3 137 - -
Lal19g1490 732 PANTHER CALCIUM-TRANSPORTING ATPASE 197 712 - -
Lal19g1490 732 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Lal19g1490 732 Gene3D - 357 629 - -
Lal19g1490 732 Gene3D - 68 139 - -
Lal19g1490 732 Gene3D - 681 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1490 Lal-Chr19 17326668 17332624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1490 193 732 Primary Pumps ATPases AT5G62670 89.834 0.0 999
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1490 K01535 - aof:109839442 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1490 19 17326668 17332624 Lal7g1410 7 19087825 19094464 ECH
Lal19g1490 19 17326668 17332624 Lal19g1490 19 17326668 17332624 ECH
Lal14g1925 14 18518589 18525170 Lal19g1490 19 17326668 17332624 LSH
Lal7g1410 7 19087825 19094464 Lal19g1490 19 17326668 17332624 LSH