Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1483 ATGCAGCTTGAGATCATTCTCTCTTTCATTCTGTTTTCCAAGGTTTCTCAAGGAGATCCAGGTCCCGGTCTCACAATGGGGAAGTCGCCAGGAAAATGGATCAAAACTTTACTGTTCAGAAAAAGGTCATCCAAAACAAATATTTCAAAAGGAAGAGAGAAGCTTGTTAGTCAAAAGGAAGGAGTGGTTTCTTCCAAGTTGTCAGAAACTGGCTTGGCTTTAGATCCAACCTTGAATTGTAATGCCAGAAATGAGGAAGACCCACATCTGGAGGATAAAGAAGCAGAAAATGTTTTACCAGGAAATCAAGAAGTAAACACGGTAGAATCTGTTCAACAAGATGCTCCATTTGATCCAGAGAAAATAATTCTGGTGGAAGCAGCAACTAAGGCACAGGCTGCTTTCAGGGGTTATTTGGCTCGGAGGGCATTCAGGGCCCTAAAAGGCATTATAAGGTTGCAAGCACTTATTCGAGGGCACTTGGTTAGGAGACAAGCTGTTGCTACATTATGCTCTATGTATAGGATTGTCAAGTTACAAGCTCTTATTCGTGGAAGAAGAGTTAGGTTGTCTGAAGTTGGGTTCGAAATCCATGAGAAGTGCAATCTGTTGAAACCTCTGGATGGCAAACATGTCAATCCAAATGACACATATACAAAAATAATGAAGCTCTCTGCAAATGCTTTCATCCGTAAGCTTCTTGCTTCATCTATTGTAATAATGCCCCTGCGTTTGCAATATGTTACTGGCGATCCAAATTCAGTTTTGAGTTGGTTGGAGCGCTGGTCATCATCTTACTTTTGGAAACAAGTTACACAACCCAAGAAAATTCGAGACATTAAGTCTCAGAGAAAGCAAGGTAATAATTCAATTGGGGAAACTCAAATGAGTAAGTCAAAACGTACCAACCGGAAGCTTCCTACATCAAATTTTGACTCGGTTCCAGTGCAAGCAAATTCTGAATTTGAGAAACCAAAACGAAACATAAGGAGAATTTCAAGCCAGCCCTCAGACCCTGTGCAGGAAAGTCCACAAATTGCGCTTGAAAAGATTAAGCGAAACTTGAGAAAGGTTCATAACCCAGTTGTTGAGAATAATGCCCCATCAGAAGTTGAATCCGAGACCCCAAAGCAGCATTCGGAAAAGGCAACAGTCAATTCAGGCCATGTTGGTGTTTCAGAACAAGGGGTCATTGGTTCTAATGAGAAGATTAAGAAAGAAGCGACACTAATCATTTCCAGTCTGCCTCCTGAAGAAATTCCTCGTGCACATTTTGTCAGTAAGGAAGTGTCTGATGTTCCAAGTATTAATCAAGTGGTTGTTGAATCAAATCCCTTGACAGATATTACAAGTAAAGATGAAAACATTTCTGATAATGATGTAAAGAATGAGCCAAAAGATTTACTAGAGACTGTTTGTAAAGATGAAAATTCTCACTTAACAAATGGAGATCTGAGTCACAAGGAAGATCCAACTGGCTGTGAAAACCTGAAACCAACCAGAAAATCCCCAATTGTAACAAAGCAGGAACGTCCAGAGAATGGTTCACTGAATAGTCCAACATTACCTAGTTATATGGCAGCAACTGAATCTGCTAAGGCAAAATTGAGGGCACAAGGATCCCCAAGATTTCCACAAGAGGTGAGTGAAAGAAACAACCCTGCACGGCGACATTCTCTACCGACTTCAATTAACAGCAAAATTAGTTCACATTCACCTAGGACGCAGAAACTAACTCAAGCTGGCGGCAAAGGGGACCATAAAAGTGACAAAACTGTATCATCTTCTAGAGAAGGGAATGGAAAGGTAGTTCAAGCAGAGTGGAAGAGGTGA 1833 0.4092 MQLEIILSFILFSKVSQGDPGPGLTMGKSPGKWIKTLLFRKRSSKTNISKGREKLVSQKEGVVSSKLSETGLALDPTLNCNARNEEDPHLEDKEAENVLPGNQEVNTVESVQQDAPFDPEKIILVEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCSMYRIVKLQALIRGRRVRLSEVGFEIHEKCNLLKPLDGKHVNPNDTYTKIMKLSANAFIRKLLASSIVIMPLRLQYVTGDPNSVLSWLERWSSSYFWKQVTQPKKIRDIKSQRKQGNNSIGETQMSKSKRTNRKLPTSNFDSVPVQANSEFEKPKRNIRRISSQPSDPVQESPQIALEKIKRNLRKVHNPVVENNAPSEVESETPKQHSEKATVNSGHVGVSEQGVIGSNEKIKKEATLIISSLPPEEIPRAHFVSKEVSDVPSINQVVVESNPLTDITSKDENISDNDVKNEPKDLLETVCKDENSHLTNGDLSHKEDPTGCENLKPTRKSPIVTKQERPENGSLNSPTLPSYMAATESAKAKLRAQGSPRFPQEVSERNNPARRHSLPTSINSKISSHSPRTQKLTQAGGKGDHKSDKTVSSSREGNGKVVQAEWKR 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1483 610 Pfam Protein of unknown function (DUF4005) 503 589 IPR025064 -
Lal19g1483 610 Gene3D - 123 170 - -
Lal19g1483 610 PANTHER IQ-DOMAIN 5-RELATED 26 597 - -
Lal19g1483 610 ProSiteProfiles IQ motif profile. 148 175 IPR000048 GO:0005515
Lal19g1483 610 ProSiteProfiles IQ motif profile. 124 152 IPR000048 GO:0005515
Lal19g1483 610 MobiDBLite consensus disorder prediction 581 595 - -
Lal19g1483 610 Pfam IQ calmodulin-binding motif 148 165 IPR000048 GO:0005515
Lal19g1483 610 Pfam IQ calmodulin-binding motif 126 145 IPR000048 GO:0005515
Lal19g1483 610 MobiDBLite consensus disorder prediction 479 610 - -
Lal19g1483 610 PANTHER PROTEIN IQ-DOMAIN 31 26 597 - -
Lal19g1483 610 MobiDBLite consensus disorder prediction 480 496 - -
Lal19g1483 610 MobiDBLite consensus disorder prediction 509 526 - -
Lal19g1483 610 SMART iq_5 123 145 IPR000048 GO:0005515
Lal19g1483 610 SMART iq_5 146 167 IPR000048 GO:0005515
Lal19g1483 610 MobiDBLite consensus disorder prediction 362 384 - -
Lal19g1483 610 MobiDBLite consensus disorder prediction 284 317 - -
Lal19g1483 610 MobiDBLite consensus disorder prediction 555 579 - -
Lal19g1483 610 MobiDBLite consensus disorder prediction 277 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1483 Lal-Chr19 17285666 17291737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1483 26 610 IQD Protein Family AT1G74690 45.082 3.10e-126 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1483 - - gmx:100794636 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0864 6 5877306 5883594 Lal19g1483 19 17285666 17291737 ECH
Lal22g0774 22 5612333 5617670 Lal19g1483 19 17285666 17291737 ECH
Lal18g0854 18 11066702 11072384 Lal19g1483 19 17285666 17291737 ECH
Lal19g1483 19 17285666 17291737 Lal19g1483 19 17285666 17291737 ECH