Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1481 ATGCCTATCATCCGTCTTGATAGAAAAGGGGAGGGAGTAAGTGTGGGCTTAATTGGGCTTGAAAGTGAAAAGAAAGAGGGAGGTGGTATTAGGGTTAAGGAGTGGAACACAACATATATAAAAAGAAAGAAGCAAAACGCCATTCAATCTGCGAAAGGAGGCACAAGGAGCAGGAACAATGGTGCACATGGGAAAACTTTCAAGAAGCCACGTCGTCCATACGAGAAGGAACGTTTGGATGCAGAGTTGAAACTTGTTGGTGAGTACGGTCTTCGTTGTAAGAGGGAACTGTGGAGGGTGCAATATGCTCTCAGTAGAATCCGTAACAATGCAAGGAATTTACTTACACTTGATGAGAAGAATCCTCGTCGTATCTTTGAGGGTGAAGCCTTACTCAGGAGAATGTTCCGTTATGGACTTCTTGATGATACTCAGAATAAGCTTGATTATGTATTGGCTCTCACCGTTGAGAACTTTCTCGAACGCCGCCTTCAAACCCTTGTTTTCAAATCTGGAATGGCTAAGTCCATTCACCATGCTAGGGTTCTCATCAGGCAGAGGCACATCAGGGTTGGGAGGCAAGTTGTGAACATCCCATCATTCATGGTTAGGGTTGATTCACAGAAGCATATTGACTTTTCACTTACAAGCCCACTTGGTGGTGGACGTCCCGGAAGAGTCAAGAGAAGGAACCAAAAGTCTGCTGCTAAAAAGGCTGCTGGTGGTGACGGTGACGAAGAAGATGAAGATTGA 753 0.4502 MPIIRLDRKGEGVSVGLIGLESEKKEGGGIRVKEWNTTYIKRKKQNAIQSAKGGTRSRNNGAHGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDDTQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRRNQKSAAKKAAGGDGDEEDED 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1481 250 Pfam Ribosomal protein S4/S9 N-terminal domain 63 161 IPR001912 GO:0019843
Lal19g1481 250 MobiDBLite consensus disorder prediction 46 61 - -
Lal19g1481 250 Pfam S4 domain 162 205 IPR002942 GO:0003723
Lal19g1481 250 Gene3D - 161 218 IPR036986 GO:0003723
Lal19g1481 250 CDD S4 162 206 - -
Lal19g1481 250 MobiDBLite consensus disorder prediction 46 71 - -
Lal19g1481 250 ProSiteProfiles S4 RNA-binding domain profile. 162 233 - -
Lal19g1481 250 TIGRFAM uS4_arch: ribosomal protein uS4 64 219 IPR005710 GO:0003735|GO:0006412|GO:0015935
Lal19g1481 250 PANTHER 40S RIBOSOMAL PROTEIN S9-2-LIKE 62 250 - -
Lal19g1481 250 SMART s4_6 162 233 IPR002942 GO:0003723
Lal19g1481 250 MobiDBLite consensus disorder prediction 215 250 - -
Lal19g1481 250 PANTHER 30S 40S RIBOSOMAL PROTEIN 62 250 IPR022801 -
Lal19g1481 250 SMART Ribosomal_S4_2 58 161 IPR001912 GO:0019843
Lal19g1481 250 ProSitePatterns Ribosomal protein S4 signature. 160 184 IPR018079 GO:0019843
Lal19g1481 250 SUPERFAMILY Alpha-L RNA-binding motif 65 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1481 Lal-Chr19 17276414 17278175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1481 63 240 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 91.011 2.71e-119 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1481 K02997 - gmx:100305663 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1481 19 17276414 17278175 Lal7g1399 7 18963276 18964486 ECH
Lal19g1481 19 17276414 17278175 Lal19g1481 19 17276414 17278175 ECH
Lal14g1917 14 18467929 18471588 Lal19g1481 19 17276414 17278175 LSH
Lal7g1399 7 18963276 18964486 Lal19g1481 19 17276414 17278175 LSH