Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1478 ATGATGGAGGGAGATGATGATGATCTCCACCATCACCGTCAACACCACACTCAAAACTTCCCATTCCAGCTCCTTGAGAAAAAGGATGATCAAGAAGCACCATCATGCTCAAACTCATCTCCATATCCAACCCTAGCAATCTCACCAACAAAACCAAGTACTTCCAATTCAAACCGATCCAATCAACTTGTTGCCCCTCCTTCCACCAACATCATTACAGAACCCTCCAAGAAGCCACCGCCAAAGCGAGCCTCCACCAAAGACCGCCACACAAAGGTTGACGGCCGTGGCCGCCGCATCCGAATGCCGGCGCTCTGTGCCGCCAGAGTTTTCCAGCTTACCCGCGAGCTCGGGCACAAGTCCGATGGCGAAACTATTGAGTGGCTCCTCCAACAGGCAGAACCCTCTGTCATCGCCGCCACCGGAACGGGGACCATCCCCGCGAACTTCACCTCTCTCAACATCTCTCTCAGAAGCTCAGGGTCCACCATGTCGGTGCCATCTCAACTTAGATCCTCGTACTTCAACCCCAACTTCTCACTTCAAGAACAACGTAGGACCTTGTTTCCCGGAATAGGGTTATCTTCTGAAAACAACAATACCTCAATGCTTCTGAATTTTCAACAATCAAATAACCTAAACACGTTGCAAGCGAAGCAGGAACTTCGAGAAGGTGTTGGTGGTGGTGGCGGCGGCGGTCAATCTTCTTCAACCACGTTGGATTTGTCTGATGCTAGCACAGATGAAGGGTTAGAAAGAAAGAGGAGACCTATGGAGCAAGACCTTTCGTCAACGCCACATCAAATGGGGAGTTATCTGCTACAGTCGAGTGCAGGTGCTATTCCAGCAAGTCACGCTCAGATTCCGGCGAATATATGGATGGTGGCACAGGCTGCGACGGCGTTGAATTCAAATAACCAGGTTATGAGTCATGGTGACCCTATATGGACATTTCCACAAGTGAATAACAGTGCTGCTTTATATAGAGGCACTGTTTCAAGTGGGTTGCATTTTATGAACTATCCTACGCCCATGGCCTTGTTGCCAGGTCAGCAACAATTTGCTTCATCTGCCAATAATAATATAAATATGAATGAAGGACATTTGAGTATGCTTGCAGGACTTAGCCCTTATCGGCCGGTGATAGGCGTTTCTGAGTCTCAAGCAAGTGGGTCTCAATCTCATCGCGGTGATTGCAGTGATGATCGCCATGATTCCAATAGTCACCAGTCGTGA 1236 0.4895 MMEGDDDDLHHHRQHHTQNFPFQLLEKKDDQEAPSCSNSSPYPTLAISPTKPSTSNSNRSNQLVAPPSTNIITEPSKKPPPKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTMSVPSQLRSSYFNPNFSLQEQRRTLFPGIGLSSENNNTSMLLNFQQSNNLNTLQAKQELREGVGGGGGGGQSSSTTLDLSDASTDEGLERKRRPMEQDLSSTPHQMGSYLLQSSAGAIPASHAQIPANIWMVAQAATALNSNNQVMSHGDPIWTFPQVNNSAALYRGTVSSGLHFMNYPTPMALLPGQQQFASSANNNINMNEGHLSMLAGLSPYRPVIGVSESQASGSQSHRGDCSDDRHDSNSHQS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1478 411 MobiDBLite consensus disorder prediction 396 411 - -
Lal19g1478 411 Pfam TCP family transcription factor 85 215 IPR017887 -
Lal19g1478 411 MobiDBLite consensus disorder prediction 1 15 - -
Lal19g1478 411 MobiDBLite consensus disorder prediction 231 245 - -
Lal19g1478 411 ProSiteProfiles TCP domain profile. 86 140 IPR017887 -
Lal19g1478 411 MobiDBLite consensus disorder prediction 80 95 - -
Lal19g1478 411 MobiDBLite consensus disorder prediction 34 72 - -
Lal19g1478 411 MobiDBLite consensus disorder prediction 223 266 - -
Lal19g1478 411 MobiDBLite consensus disorder prediction 1 95 - -
Lal19g1478 411 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 10 410 IPR005333 GO:0003700
Lal19g1478 411 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 10 410 - -
Lal19g1478 411 MobiDBLite consensus disorder prediction 246 261 - -
Lal19g1478 411 MobiDBLite consensus disorder prediction 386 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1478 Lal-Chr19 17264367 17265602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1478 76 405 TCP Transcription Factor Family AT3G47620 42.926 1.73e-69 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lal19g1478 TCP 3.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1478 - - pvu:PHAVU_003G190900g 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1478 19 17264367 17265602 Lal7g1397 7 18951276 18952526 ECH
Lal19g1478 19 17264367 17265602 Lal19g1478 19 17264367 17265602 ECH
Lal14g1914 14 18452938 18455163 Lal19g1478 19 17264367 17265602 LSH
Lal7g1397 7 18951276 18952526 Lal19g1478 19 17264367 17265602 LSH