Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1477 ATGGTGAGACCCCCTTGCTGTGAAAAAATTGGGATTAAGAAAGGACCTTGGACTCCGGAAGAGGACATCATTTTGGTCTCTTACATTCAAGAACACGGCCCTGGGAATTGGAGATCCCTTCCAACTAATACAGGTTTAATGAGATGTAGTAAAAGTTGCAGACTTAGATGGACTAATTATCTTCGACCAGGTATTAAACGAGGTAACTTCACTGATCATGAGGACAATATGATAATCCACCTTCAAGCTCTTTTGGGCAATAGATGGGCTGCTATAGCTTCCTATCTTCCACAAAGGACAGACAATGACATAAAAAATTACTGGAACACCCATTTGAAGAAGAAGCATAAAAACAAGCTTGAAACTGGAGGAGATGATGGCCAAGAAGGACATTTTTGTTCTTCTTCTTCACAAACACAAACAAAGGGTCAATGGGAAAGAAGGCTACAAACTGATATCCAAATGGCCAAACAAGCCTTGTCTGAGGCTTTGTCCCTTCACAAACCAACAACAAATACTAGTTTTACTTTCCCTGAAACCAAACCCTCAACTTCTCATATTCACAACACTACTACAAGTTCAACCTACCCCCTAAAACAATCAAACATTAATGCATCCTCAGCATATGCTTCAAGTTATGAAAACATATCTAAGTTGCTAGAAAACTGGATGATGAAACCCCCAAAGACTCCAAATTTATCCAGCAACAACATGGTCACTGCAGGATCAAGTTGTAGTGAAGGAGCAAATAGTACCACTGATCATTGCACACCAGATCATGCTTTTGAAGACGTTAACAACAACAACAACAACAGCAACATGAGAACCAATGAGGCTGCCTTCTTCCAAGATCAAAAGAAGACAAACATGGAGACTAATCATCATCAAGTGCCTCTTACTTTGGTAGATAATTGGCTTTTTGATGATGAAGAATGCCATGAAGATCTAATGAACATGTCACTCGAGGAAAGTACCTCAGGTTTGTTTTAG 990 0.397 MVRPPCCEKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSLPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEDNMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKHKNKLETGGDDGQEGHFCSSSSQTQTKGQWERRLQTDIQMAKQALSEALSLHKPTTNTSFTFPETKPSTSHIHNTTTSSTYPLKQSNINASSAYASSYENISKLLENWMMKPPKTPNLSSNNMVTAGSSCSEGANSTTDHCTPDHAFEDVNNNNNNSNMRTNEAAFFQDQKKTNMETNHHQVPLTLVDNWLFDDEECHEDLMNMSLEESTSGLF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1477 329 SMART sant 13 63 IPR001005 -
Lal19g1477 329 SMART sant 66 114 IPR001005 -
Lal19g1477 329 MobiDBLite consensus disorder prediction 120 146 - -
Lal19g1477 329 CDD SANT 69 110 IPR001005 -
Lal19g1477 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 314 - -
Lal19g1477 329 CDD SANT 16 61 IPR001005 -
Lal19g1477 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal19g1477 329 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal19g1477 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal19g1477 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal19g1477 329 MobiDBLite consensus disorder prediction 170 195 - -
Lal19g1477 329 Gene3D - 13 66 - -
Lal19g1477 329 MobiDBLite consensus disorder prediction 129 146 - -
Lal19g1477 329 Gene3D - 68 168 - -
Lal19g1477 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lal19g1477 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lal19g1477 329 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 314 - -
Lal19g1477 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1477 Lal-Chr19 17249301 17250804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1477 1 329 MYB Transcription Factor Family AT5G62470 51.955 4.25e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal19g1477 Myb_DNA-binding 9.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1477 K09422 - gmx:100812460 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1477 19 17249301 17250804 Lal19g1477 19 17249301 17250804 ECH
Lal14g1909 14 18426580 18428295 Lal19g1477 19 17249301 17250804 LSH
Lal7g1394 7 18924460 18926225 Lal19g1477 19 17249301 17250804 LSH