Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1473 ATGGCCACCGTCATTACTCAGGCTTCTGCCTCCATTTTCAAGCCATGTGCTTCTAAGTCAAGGTTCCTCAATGGCTCTTCCACTAAACTTAACAGGCAAGTGTCTGTTAGTTTTACATCAATGAAGTATCCTTCATCTACCTCCTCCTTCAAGGTTCAAGCTAGGAACGCAGAGTGGTTGCCAGGCTTGGACTCCCCAACTTACCTCACTGGCAGTCTTCCCGGTGACAATGGATTTGATCCTCTGGGGTTGGCTGAGAAGCCAGAGGACTTGACGTGGTTTTTTCAAGGTGAGCTTGTGAATAGTCGTTGGGCTATGTTAGGTGTTGCAGGAATGTTGGTTCCTCAAATCATCAACAAAGTTGGTGGTACCAATTTCCCTGAATGGTTTGATGCTGGGAAAGAACAATACTTTGCATCATCCTCAACACTGTTGGTGATTGAGTTCCTTTTGTTCAATTTCGCGGAGCTCAGAAGATTGCAGGATATCAAGAACCCTGGAAGTGTTAACCAAGATCCTATCTTTAAGCAATACAGCTTAGCTCCTCATGTGCTTGGATACCCTGGTGGCTTCTTTAACCCCTTGAATTTGGAACCAACACTGGAGGCTAAAGAGAGAGAACTTGCCAATGGGAGACTGGCAATGTTGGCATTCTTGGGACTTGTGGTTCAATACAGCGTAACAGGGAAAGGACCATTTGAAAATCTGCCATGTGCTTCCAAGCCAAGGTTCCTGAATGGTAACAGGGATGTGTCTGTTAGTTTTACACAAAGGAAGACTGTTTCATACACATCTTCCTTCAAGGCTCAAGCCAGGGAAGCTGAGTGGTTGCCTAACTTCGAATCCCCAGATTACCTCACTGGCAGTCTTCCCGGTGACAATGGATTTGATCCTCTGGGATTGGCGAAGGAGCCACAGAACTTGAGGTGGTTTGTTCAAGGTGAGCTTGTGAATAGTCGTTGGGCTATGTTAGGTGTTGCAGGAATGTTGGTTCCTCAAATCATCAACAAAGTTGGTGGTACCAATTTTCCTGAATGGTTTGATGCTGGGAAAGAACAATACTTTGCATCATCCTCAACACTGTTGGTGATTGAGTTCCTTTTGTTCAATTACGCCGAGCTCAGAAGATTGCAGGATATCAAGAACCCTGGAAGTGTTAACCAAGATCCCATCTTTAAGCAATACAGCTTAGCCCCTCATGTGCTTGGATACCCTGGTGGCTTCTTTAACCCCTTGAATTTGGAACCAACATTCGATGCTAAAGAGAAAGAACTTGCCAATGGGAGACTAGCAAAGTTGGCATTCTTGGGAAATGTGGTTCAATACAGTGTAACAGGGAAAGGACCATTTCAAAACCTCTCGGACTTTATCTCAGATCCAGTGCACAACAACATTTTCCAAAACCTTGGCCACCACTAA 1419 0.4503 MATVITQASASIFKPCASKSRFLNGSSTKLNRQVSVSFTSMKYPSSTSSFKVQARNAEWLPGLDSPTYLTGSLPGDNGFDPLGLAEKPEDLTWFFQGELVNSRWAMLGVAGMLVPQIINKVGGTNFPEWFDAGKEQYFASSSTLLVIEFLLFNFAELRRLQDIKNPGSVNQDPIFKQYSLAPHVLGYPGGFFNPLNLEPTLEAKERELANGRLAMLAFLGLVVQYSVTGKGPFENLPCASKPRFLNGNRDVSVSFTQRKTVSYTSSFKAQAREAEWLPNFESPDYLTGSLPGDNGFDPLGLAKEPQNLRWFVQGELVNSRWAMLGVAGMLVPQIINKVGGTNFPEWFDAGKEQYFASSSTLLVIEFLLFNYAELRRLQDIKNPGSVNQDPIFKQYSLAPHVLGYPGGFFNPLNLEPTFDAKEKELANGRLAKLAFLGNVVQYSVTGKGPFQNLSDFISDPVHNNIFQNLGHH 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1473 472 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 236 - -
Lal19g1473 472 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 248 469 - -
Lal19g1473 472 SUPERFAMILY Chlorophyll a-b binding protein 55 236 - -
Lal19g1473 472 Pfam Chlorophyll A-B binding protein 283 442 IPR022796 -
Lal19g1473 472 Pfam Chlorophyll A-B binding protein 66 225 IPR022796 -
Lal19g1473 472 SUPERFAMILY Chlorophyll a-b binding protein 272 469 - -
Lal19g1473 472 Gene3D Chlorophyll a/b binding protein domain 283 462 - -
Lal19g1473 472 Gene3D Chlorophyll a/b binding protein domain 66 242 - -
Lal19g1473 472 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 236 IPR001344 GO:0009765|GO:0016020
Lal19g1473 472 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 248 469 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1473 Lal-Chr19 17226475 17237255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1473 265 466 Chloroplast and Mitochondria Gene Families AT3G61470 45.972 1.34e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1473 K08910 - rcu:8263414 358.992