Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1470 ATGGAAAACATTTCAGGTCTGTGTAAGGAAGAGGATAAGATGGATTTGCCTCCTGGATTTCGGTTTCACCCAAGTGATGAAGAGCTTATAAGCCAATACCTTTACAAGAAGGTTATTGATACCAAATTCACTGCAAGGGCTATTGGAGAAGTGGACCTGAATAAGTGTGAGCCATGGGATTTGCCTTGGAAAGCAAAGATGGGAGAAAAGGAATGGTACTTTTTCTGTGTGAAGGATAGGAAATACCCAACTGGGTCAAGGACCAACAGAGCCACTGAATCAGGGTATTGGAAGGCTACAGGGAAAGACAAGGAGATTTTCAAAGGAAAATCATTGGTTGGTATGAAGAAAACTCTGGTTTTTTACAAAGGAAGAGCACCAAAAGGAGAGAAAAGTAACTGGGTCATGCATGAATACAGACTTGAGGGAAAATTTACTGTTAACTACCTCCTACAAACTGCAAAGAATGAGTGGGTTATTTGTAGGGTTTTCCAGAAGAGTTTAGCTTCGAAGAAAATTCATATTTCTGGGATAATGAAGTTGGATTCTTATGGAAATGAATTGGATTCTTATGTTCAACCACCCAAACCAATGAATGATTCTGTTTACGTGCCCTGCTTCTCCAATCCTATTGATAATGTTGAAACAAATAACAACAACAACAACAACAACCAAGGAAGGATCTTTGATCCCTTCACCAACCCCAGTTATGGGAATTTATCAAATCCATTACAATTTTCTTCTCTAACAGTGCCACCACCCACAGTCACTGCCTCATTCTACACCTCTACCCAAGGTTTTCATCAAGTCCAAGCTCCAGTTCCAGCAAATTTACCATCACCTAGTTCTGTTTACAACAGGCAGGACCAGACTATGATGAGAAACTTTTATGACAATGGCTCAAACATGGTGAATGTTGGTTTCAACACTGATGGAGAAATGGTTAGTGTCTCACAGGAAACATGTCTCACTACTGATATGAATGCTGAAACCTCTTCTGTTCTGTCCAATTTTGATATGTGTAGGATTCCCTTTCACTCTCCTGCTCCTGCAGCAATGGACCTTGATGGTTTATGGAATTACTAA 1086 0.4015 MENISGLCKEEDKMDLPPGFRFHPSDEELISQYLYKKVIDTKFTARAIGEVDLNKCEPWDLPWKAKMGEKEWYFFCVKDRKYPTGSRTNRATESGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFTVNYLLQTAKNEWVICRVFQKSLASKKIHISGIMKLDSYGNELDSYVQPPKPMNDSVYVPCFSNPIDNVETNNNNNNNNQGRIFDPFTNPSYGNLSNPLQFSSLTVPPPTVTASFYTSTQGFHQVQAPVPANLPSPSSVYNRQDQTMMRNFYDNGSNMVNVGFNTDGEMVSVSQETCLTTDMNAETSSVLSNFDMCRIPFHSPAPAAMDLDGLWNY 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1470 361 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Lal19g1470 361 SUPERFAMILY NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Lal19g1470 361 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Lal19g1470 361 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 8 357 - -
Lal19g1470 361 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Lal19g1470 361 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1470 Lal-Chr19 17207718 17209527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1470 14 361 NAC Transcription Factor Family AT5G07680 49.721 1.99e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal19g1470 NAM 5.1e-39 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1470 19 17207718 17209527 Lal7g1380 7 18866526 18868370 ECH
Lal19g1470 19 17207718 17209527 Lal19g1470 19 17207718 17209527 ECH
Lal7g1380 7 18866526 18868370 Lal19g1470 19 17207718 17209527 LSH