Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1468 ATGGAGGAATTGAAGGAGCAGGGGGGGCTTCGTTTTGTGTCTAAATTGATATTATGTGCTATTTCTGCAGCTCTCACTGGCTGTTTTGCTATTGCTGGAGCACTTGGAGGAGCTTTTGTTGGTGCTTTAGCAGCCAAGGCTTCTAAGAGTAGTTTTCTCAGGGGAACTTCATTGGGTGCCATTGCTGGGGCTGTCATCTCAGTGGAAGTGTTGGAAGCTTCCCGCGACTTCTTGTTTATGGACCGAACTGGCTCACAGGGTGCATCATATATGGCACATTTCATAGATGAACTTGTTCGCGGGAGGCTTGTAGAGGAATCACTTACACCTGTTATTGTACCTGCTTACAATTTGCAGTATGAGCAGGGTCGAGTTGCTAATACAGGATATGCTGAGATTCATGATTTTCAATATGATAGCTTAGTAGCATCCAGAGGATTGTCAGGGGATTCATTGAAAAAGTTACCTCACCATGTGGTCTTGAATGCAGATACTACATGCTGCACAATATGTTTGCAGGATATTGAAGTGGGAGAAACTGCAAGAAGCTTACCTCAATGTCAGCATACATTCCATTTGATATGTGTGGACAAATGGCTTGTCAAGAATGATTCATGTCCTGTCTGCAGACAAGGTGTGTACGGTCATAAGGTATCTTCTAATGGGAGGAACAAACTTTGGGTATCTTCTAGTAAGACAGGAGCAATTGCCAGCATGCCAAGCACCTTAATGATGCCTTATAGGCCTGCTTGCTTACTCATGAATATTGTCTGCCAAGTTCAAACAGAGTAA 792 0.4369 MEELKEQGGLRFVSKLILCAISAALTGCFAIAGALGGAFVGALAAKASKSSFLRGTSLGAIAGAVISVEVLEASRDFLFMDRTGSQGASYMAHFIDELVRGRLVEESLTPVIVPAYNLQYEQGRVANTGYAEIHDFQYDSLVASRGLSGDSLKKLPHHVVLNADTTCCTICLQDIEVGETARSLPQCQHTFHLICVDKWLVKNDSCPVCRQGVYGHKVSSNGRNKLWVSSSKTGAIASMPSTLMMPYRPACLLMNIVCQVQTE 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1468 263 ProSiteProfiles Zinc finger RING-type profile. 168 210 IPR001841 -
Lal19g1468 263 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 5 212 - -
Lal19g1468 263 SUPERFAMILY RING/U-box 167 214 - -
Lal19g1468 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 214 IPR013083 -
Lal19g1468 263 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 5 212 IPR044523 -
Lal19g1468 263 SMART ring_2 168 209 IPR001841 -
Lal19g1468 263 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Lal19g1468 263 Pfam Ring finger domain 168 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1468 Lal-Chr19 17198707 17202230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1468 13 213 C3H Transcription Factor Family AT1G74410 51.707 2.54e-62 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1468 - - gmx:100800105 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1468 19 17198707 17202230 Lal19g1468 19 17198707 17202230 ECH
Lal14g1901 14 18393762 18395585 Lal19g1468 19 17198707 17202230 LSH