Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1461 ATGGAAGAAGATCAAGAATTGGTGAAACAACACTACGTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGTAGATCCTTAGGGGGTCACGTGAGGACTCATATCTCAAATTTGTCATCATCATCAGCTGAAACTGAAGATAAAGAAAAAGAAAAAGTTGGTGGTTCTGAAGCTGGAACAACCATTAACACTGGCTATGGTTTAAGGGAGAATCCAAAGAAGACTTGGAGGATTGCAAATTCAACAAGTGAAGACACTTTGCTCACTCTCACTACTGACAAGTTATGTAGAGAGTGTGGCAAAGGGTTTCAATCATGGAAAGCCTTGTTTGGACACATGAAATGTCACAGTGACAAAGAAAGAGTTTCCAACAACAACAACAACAACAGCTTGGTGGAGGATCAGGATTCTGTGACTAACAACAATACTAGAAGCAGCCACAATCAGAAGCTGGTCTTGGATAGCCAATCTGATAATGAAGCAACTGCTCCAAGTAAGAGAAGAAGATCAAAAAGAAGAAGAACAAGGTATATAGTTGGTTCTGCCAATCCTTCCTTTTCTTCTTCACTTTCTGAAGCTGAACAAGAACAAGAAGATGGTGCCATGAGCCTGATCATGCTTAGCAGGGATTTGAGTCCTTGGAGTGGTCTTAATTCTTTTGCTCATCATTTATCTCATAATAACTCTGCTTACTTCCAACCTTCATCTTCTGAGATTGCGACAATGATCAAGCAAAGTGAGAAGAAGCTGGAGTTTGGTAATTTTGCTTCTGGAAATCTCAACTCCAAAGGGAAATTTTCTGAACCTTTGGCTGCTGAGTTCATCAAGAATGTGAAAGATAACAAATGTGAGCTTGATTATGTGTCTGCATTGGAACACGGAAAGGACATAGTCAACCGATCAGAATCAGTTTTATCGAAGTCTAATATTACTAACAAGTACAATTCAATTAATACAGAGTTTTTTTCTTCTGAATTGAAGTCAAAGTCTCTTTATAACTGGGCAGAGAAGGCTTCAGAAGCAGCTGAATTTAGCAAGAACACTCATAAGAGAGGCAAGTTTGAGTGTGGAACTTGCAACAAAATCTTTCACTCATACCAAGCTCTCGGAGGTCACAGAGCTAGTCACAAGAGGAACAAAAGCTGCTTTGTTACAAGGAAAGAGAGCAGTGAAAACGGCATTGAAACTGAGCTCTCTCCTGATCCAATTACTGAAAGCAAGTTCATGAAGAACAGTGACAGTGAATATCTGGTTGAACCTGAAGCGAATGATAATGAGGTAGCAGACACGGTTACCGACTCTAAGAAGAGCAAAGTGCATGAGTGTCCAATTTGCTTTAAGGTTTTTCAATCTGGACAAGCCTTGGGTGGACACAAAAGATCTCATTTGACTATTGGTACTGAGAGTACTAAAAACTTTCAAAAAGTTGTAGTTGAGGAACCAGTTCAAGAAATTAGGGAGTTCCTTGATCTCAATCTTCCTGCTGCTACAGAAGAGGGAAGTACTAGCTACATTGATTCTCACAGACCCTGGTGGTTTGGTGATAACAATCACAAGCAGGAGGCACCAATAGGTGTCATGACCAGCTAA 1590 0.4044 MEEDQELVKQHYVCKFCSKSFPCGRSLGGHVRTHISNLSSSSAETEDKEKEKVGGSEAGTTINTGYGLRENPKKTWRIANSTSEDTLLTLTTDKLCRECGKGFQSWKALFGHMKCHSDKERVSNNNNNNSLVEDQDSVTNNNTRSSHNQKLVLDSQSDNEATAPSKRRRSKRRRTRYIVGSANPSFSSSLSEAEQEQEDGAMSLIMLSRDLSPWSGLNSFAHHLSHNNSAYFQPSSSEIATMIKQSEKKLEFGNFASGNLNSKGKFSEPLAAEFIKNVKDNKCELDYVSALEHGKDIVNRSESVLSKSNITNKYNSINTEFFSSELKSKSLYNWAEKASEAAEFSKNTHKRGKFECGTCNKIFHSYQALGGHRASHKRNKSCFVTRKESSENGIETELSPDPITESKFMKNSDSEYLVEPEANDNEVADTVTDSKKSKVHECPICFKVFQSGQALGGHKRSHLTIGTESTKNFQKVVVEEPVQEIREFLDLNLPAATEEGSTSYIDSHRPWWFGDNNHKQEAPIGVMTS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1461 529 SUPERFAMILY beta-beta-alpha zinc fingers 11 116 IPR036236 -
Lal19g1461 529 MobiDBLite consensus disorder prediction 118 194 - -
Lal19g1461 529 SMART c2h2final6 354 376 IPR013087 -
Lal19g1461 529 SMART c2h2final6 12 34 IPR013087 -
Lal19g1461 529 SMART c2h2final6 94 116 IPR013087 -
Lal19g1461 529 SMART c2h2final6 440 462 IPR013087 -
Lal19g1461 529 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 527 - -
Lal19g1461 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Lal19g1461 529 SUPERFAMILY beta-beta-alpha zinc fingers 354 462 IPR036236 -
Lal19g1461 529 MobiDBLite consensus disorder prediction 180 194 - -
Lal19g1461 529 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Lal19g1461 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 354 381 IPR013087 -
Lal19g1461 529 Gene3D Classic Zinc Finger 351 462 - -
Lal19g1461 529 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 527 - -
Lal19g1461 529 MobiDBLite consensus disorder prediction 122 160 - -
Lal19g1461 529 Pfam C2H2-type zinc finger 439 463 - -
Lal19g1461 529 Pfam C2H2-type zinc finger 11 34 - -
Lal19g1461 529 Pfam C2H2-type zinc finger 96 118 - -
Lal19g1461 529 Pfam C2H2-type zinc finger 354 378 - -
Lal19g1461 529 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Lal19g1461 529 ProSitePatterns Zinc finger C2H2 type domain signature. 442 462 IPR013087 -
Lal19g1461 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
Lal19g1461 529 ProSitePatterns Zinc finger C2H2 type domain signature. 356 376 IPR013087 -
Lal19g1461 529 MobiDBLite consensus disorder prediction 37 68 - -
Lal19g1461 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 440 462 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1461 Lal-Chr19 17167393 17168982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1461 435 499 C2H2 Transcription Factor Family AT1G26610 55.385 1.53e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal19g1461 zf-C2H2_6 2.3e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1891 14 18340351 18341934 Lal19g1461 19 17167393 17168982 LSH
Lal7g1363 7 18760966 18762279 Lal19g1461 19 17167393 17168982 LSH