Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1448 ATGGCTCAATCGATTACCCCAAATGCTATTTCAGCTTTACTTTCTAACCCTTCCCCAGACTCTTCTTCAGACATCGTTGTCCAAGTCCTCGATCTCAGACCTCGCGGCAACAGATTCTCGTTCAATGCTAGTGATGGAAAATTGAAGCTGGGAGCAATTCTACCTTCCAATCAAAGCCTTGAGGTACACTCTGGAAATATTCAGAATCTCGGTCTTATTCGAATCCTCGATTACACTCTCAACGACATCCCTAACCAATCTGAGAAATATCTTATTGTAACGAAATGTGAACCTGTCTCACCTGCGCTTGAAGCGGAGATTAAGAGTGAGGACAAAACTGTAAGCGCTTCTTTTTCTGCTGGCATTGTTTTGAAGCCAAAGCAGGAAGTGGCAAAATCTGCGGCTCAGATTGTACAAGAACAACATCATAATGTGACTCGTACTGAACGGAAGGCAATGTCACGGAGGGTGAATCCTCTTGTATCATTGAATCCTTACCAAGGTAATTGGACAATCAAGGTTAGTGTTACAAGCAAAGGGAACATGCGTACTTATAAGAATGCTAGAGGAGAAGGTTGTGTCTTCAATGTGGAGTTGACTGATGAAGATGGCACTCAAATTCAAGCAACCATGTTTAATGAGGCTGCAAGGAAATTTTATGACAAGTTTGTTCTGGGAAAAGTTTATTACATTTCAAAGGGAACTTTAAAAGTTGCTAATAAACAGTTTAAAACTGTTCAAAATGATTATGAAATGACACTGAATGATTATTCTGAGGTGGAAGAGGTGGCTGATGAAGCAGCTTTTGTCCCTGCAACAAAATTTAACTTTGTTCAGATTGATCAGTTGGGTCCTTATGTCAACAAGAATGAGCTTGTTGATGTAGTTGGAGTTGTTCAGAACGTGTCTTCAACCATGAGCATTAGGAGGAAGAGCAACAATGAGACTGTTCCAAAGCGTGACATTACTATTGCCGATGATACTAAGAAGACAGTAGTCGTATCATTGTGGAATGAGCTTGCAACTACCATAGGGCAAGAGTTGCTTGACATTGCTGATCAATCTCCAGTAGTTGCTATCAAATCCCTCAAGGTTGGGGATTTCCAAGGTGTTTCGCTGTCAGCTATAAACAAAAGTGCAGTTCTAATAAATCCAGACTTACCCGAAGCAAATAAACTCAGATGCTGGTATGATTCTGAAGGCAAGGAAGCTGCAATGGCCTCTGTGGGTGCTGGGTCAAGTCCAGCAAGCAAGAATGGAAACAGATCAGTGTATTCTGATCGTGTTTCACTTTCTCACATAACTTCAAACCCATCCTTGGGGGAGGACAAGCCTGCATTCTTCAGTATTAGAGGATATATAAGCTTTATCAAGCCTGAGCAGGCAATGTGGTACCGTGCATGTAAAACTTGCAACAAGAAAGTTACTGAAAGCATCGGTGGTGGGTATTGGTGTGAAGGTTGCCAGAGAAATGATGACCAGTGCAATTTAAGGTATATTATGGTTGTAAAAGTTTCTGATGCAAGTGGGGAGGCTTTTATCTCAGTCTTCAATGAGGAGGCTGAGAAGGTTGTTGGATTATCTGCTGATGAGCTTGACAACCTTAAATCACAGGATGGGGAAGATAGTCCTTATCAATTGAAATTGAAACAAGCTACTTGGGTTCCACATCTTTTCAGGGTTAGTGTTACTCAGAATGAGTATAATAATGAGAAGAGGCAAAGGATTACAGCCCGTGCAATTGTTCCTGTTGACTTCGCTACTGAGTCAAAGCTTCTCCTCGAAGATATTTCAAAGATGGGAGTTTCTCAATAA 1815 0.4132 MAQSITPNAISALLSNPSPDSSSDIVVQVLDLRPRGNRFSFNASDGKLKLGAILPSNQSLEVHSGNIQNLGLIRILDYTLNDIPNQSEKYLIVTKCEPVSPALEAEIKSEDKTVSASFSAGIVLKPKQEVAKSAAQIVQEQHHNVTRTERKAMSRRVNPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNDYSEVEEVADEAAFVPATKFNFVQIDQLGPYVNKNELVDVVGVVQNVSSTMSIRRKSNNETVPKRDITIADDTKKTVVVSLWNELATTIGQELLDIADQSPVVAIKSLKVGDFQGVSLSAINKSAVLINPDLPEANKLRCWYDSEGKEAAMASVGAGSSPASKNGNRSVYSDRVSLSHITSNPSLGEDKPAFFSIRGYISFIKPEQAMWYRACKTCNKKVTESIGGGYWCEGCQRNDDQCNLRYIMVVKVSDASGEAFISVFNEEAEKVVGLSADELDNLKSQDGEDSPYQLKLKQATWVPHLFRVSVTQNEYNNEKRQRITARAIVPVDFATESKLLLEDISKMGVSQ 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1448 604 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 598 - -
Lal19g1448 604 Gene3D - 411 600 IPR012340 -
Lal19g1448 604 Pfam OB-fold nucleic acid binding domain 170 258 IPR004365 GO:0003676
Lal19g1448 604 SUPERFAMILY Nucleic acid-binding proteins 1 103 IPR012340 -
Lal19g1448 604 Gene3D - 156 266 IPR012340 -
Lal19g1448 604 SUPERFAMILY Nucleic acid-binding proteins 426 600 IPR012340 -
Lal19g1448 604 CDD RPA1_DBD_B 303 398 - -
Lal19g1448 604 Pfam Replication factor-A protein 1, N-terminal domain 5 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lal19g1448 604 PANTHER REPLICATION FACTOR A 1, RFA1 5 598 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal19g1448 604 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 599 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal19g1448 604 Coils Coil 518 538 - -
Lal19g1448 604 Gene3D - 270 410 IPR012340 -
Lal19g1448 604 CDD RPA1_DBD_C 431 599 IPR013955 -
Lal19g1448 604 Pfam Replication factor-A C terminal domain 447 593 IPR013955 -
Lal19g1448 604 SUPERFAMILY Nucleic acid-binding proteins 159 267 IPR012340 -
Lal19g1448 604 SUPERFAMILY Nucleic acid-binding proteins 275 402 IPR012340 -
Lal19g1448 604 Pfam Replication protein A OB domain 287 384 IPR031657 -
Lal19g1448 604 CDD RPA1_DBD_A 159 262 - -
Lal19g1448 604 Gene3D - 4 109 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1448 Lal-Chr19 17080162 17083417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1448 1 604 Core DNA Replication Machinery Family AT5G08020 66.995 0.0 873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1448 K07466 - qsu:112017680 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1448 19 17080162 17083417 Lal19g1448 19 17080162 17083417 ECH
Lal7g1352 7 18689587 18692790 Lal19g1448 19 17080162 17083417 LSH