Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1444 ATGGTGATTGAGAATTCAAGTAAAGGTTATCAAGCAAAGAAAGAGGGTAATATTGAGAAGGTGTCAATGGCACCATCAACTTCTTCAAGACAATGGTCAGCATTCAGAAATCCAAGAATAGTGAGAGTGTCAAGTGCTTTGGGAGGAAAAGATAGGCATAGCAAAGTTTGCACTGTTAGGGGACTAAGGGACAGGAGGATTAGGCTTTCTGTGCCAACAGCAATTCAGTTATATGATCTTCAAGACAAACTTGGTCTCAACCAACCTAGCAAAGTCATAGATTGGTTGATTGAAGCCACAAAACTTGATATTGATAAGCTCCCTCCACTTCAAATCCCTCATGGTTTCCCCCAATTTTATCACCAACAAACCCTATTGCCCAGTGCCTCTCATCATCATCAGTTTTCTCTTGGAGGTTTCTATGATTCTAATCTTTCCACACCCATAAGAGATAATGGTGGAAAGCATCAAACTCTCTTGGCAAAATCAAGGTATAATTGGGATTTTGATTCAGAATATTCAAGACTAAAAGATAAGGAAGCTGAAAGTGTAATGTCCAATATCTCTGAAAAAGGAAAGTGGATCAAAACAGGTAGTGAACAAGAAAATCAAGATGGGGCTTATGGTTATAATAGACAGGATTCATCTCAGAGGCTTTTCCATGGTTTGTTAAACAATGCAATGGCATATAACTCCCCCTACCATTCTGAGCCTTCAACTTTATCTTTATCCCAATTTGGAAGCCATGGATCTTTATTTCCTTCCCATGTAGACCCTCATCAAAACAGTGGCAGTGGTGTGCAATTTTCATCTTATAATTTGGCTGTACCATCTGGTTCTCAATTACTTTTTTCTCCATCTTCTGCTACACCATCACTTTTCACTCCCTATGCTCCATTTATGGCCAACTCATCAGTGGAAAATGATCCAAGACAAGTCAACCATGTTCAGATCTTGAGCTCATCTAGTAATAATAATTCACAAGTCATGCAACCTCATCCTCTCATTCAGTCTTTTCACTCACTAAATTCACCTCTCAGACGCCTTCCAATACCATTTAATTCCAAGCTTCTTGACTCAGATAGCAATAACATTCGTAGCCAACCAAATAAGGGAAATGGTTCTCCTTCTTGA 1134 0.3915 MVIENSSKGYQAKKEGNIEKVSMAPSTSSRQWSAFRNPRIVRVSSALGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVIDWLIEATKLDIDKLPPLQIPHGFPQFYHQQTLLPSASHHHQFSLGGFYDSNLSTPIRDNGGKHQTLLAKSRYNWDFDSEYSRLKDKEAESVMSNISEKGKWIKTGSEQENQDGAYGYNRQDSSQRLFHGLLNNAMAYNSPYHSEPSTLSLSQFGSHGSLFPSHVDPHQNSGSGVQFSSYNLAVPSGSQLLFSPSSATPSLFTPYAPFMANSSVENDPRQVNHVQILSSSSNNNSQVMQPHPLIQSFHSLNSPLRRLPIPFNSKLLDSDSNNIRSQPNKGNGSPS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1444 377 Pfam TCP family transcription factor 49 170 IPR017887 -
Lal19g1444 377 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 3 371 - -
Lal19g1444 377 MobiDBLite consensus disorder prediction 355 377 - -
Lal19g1444 377 MobiDBLite consensus disorder prediction 356 377 - -
Lal19g1444 377 ProSiteProfiles TCP domain profile. 49 107 IPR017887 -
Lal19g1444 377 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 371 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1444 Lal-Chr19 17064477 17065610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1444 33 344 TCP Transcription Factor Family AT5G60970 46.082 9.03e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lal19g1444 TCP 6.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1444 - - lang:109361996 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1347 7 18666917 18668717 Lal19g1444 19 17064477 17065610 LSH