Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1438 ATGGAATCTTGGAGCTATGTTTCTGAAGAAAAAGGGTATGTCTCAAATGACACACTTTCCCCTCCTAATACCCTCGGGAGGAGTAAAAATTCAATCTTGGGATGGGAACTGAAAACCCCATGTAGTTTTCCCAATGATATGTTAGCCATTGAGAATCAATGTTTTCATGATTTGGGGTATCCTGAAATGTTGGGGAAACACTTGTCTAATGAACATGATGGCAGAATCACTAGTACTACTGTTATGGATGATGCTCCAAATCCATTTTATGCAAGAGGGGATTCCAATATCAGGGTTTCAAACTCTGTGTTGGACTCTAATGGTAGTGATTCACTCATTGATTTGAAGTTGGGAAGATTGGCTGATAATGGAGATGCAATTGATATGGCATTTTGCAAAGGAACACCTATGTTGTCTTCATCTGAGTCATCCACACCTGCAAAGCGAGTTAGAGCTTCGGGGTTGCGCTCGCAGATTGCGTATTGCCAAGTCTATGGCTGTAATAAGGATCTCAGTTCTTGTAAGGATTATCACAAGAGGCATAGAGTTTGTGAGGTTCACTCCAAGACTGCCACAGTTACAGTGAATGGCATTCAGCAAAGGTTTCATTTGCTAGCTGAATTTGATGATGGTAAGCGCAGCTGCCGTAAACGCCTAGCAGGCCATAATGAGCGTCGGAGAAAACCACAAATGGGTATTCACTCTGTAAAGGCGGGGAGGTTGCTTCAGCCATGTGGTGATAGCAGATTCCAGGGGACCATGCTAACAACGGCATCTTATATCTGCCCAGAGATGCTCCCTAGTGGGGTCATGCCTTCTGAGAAATATGGAACGAGTGACTTCTGGAGATCTAATAAAGCAGAAGAATGGACAGGTTTTAAGAATCTTTCTTCTACACCTATCTCCAATGGATATTCTCAGTCAAGATCCCTATTTCCTTCATATAACCAAAAACAGTTCCCTTTTCTTCATGAAAATGGTGCTACATCCACTACAGGAAGCATCTTCTCTGACCATAATATCCAATACCCACCACCTGTCCTTGGGGCCCAAAATTCTGGGTCAAGATCACTATTCCAGGACACAACCTCCTTAGGAAGTGAGGACTTCAATATTTTTGAAACAACATCAACTGTTCAAGGACTATCGGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCACGTCAATCATCTGGAGTTCCCTTGGCTAACCACTTTGTTATTCCAAGCAGCCATAGTCATCACTACAACATGAGTCGGGTCTCCGAGAAGATGGGAAATAACTCACACGCATTGTCAAATCGAGTATCAGATAGGTTTCCATCAGAAATGAATCCTGCAGATGGAAATCATCTTAATCCTGTGTTGATACCAGACAATGGTGACGGTATTGTCAACTTTGGAATGGCAGATGGGATTTTCCAAGGTTCAGCTTTTCTGAATGTAAAAGACTATCTTCCTCGTGAAGATGGTGCAACCATTGATTTGCTACAACTGTCATCACAGCTTCAGCGAGTTGAGCGTCAGAGGCAACCCTCGCAGGTTAAGCAAGAAAATGACTCTTTTTGCACTCTCCGGATTACTTAA 1611 0.4289 MESWSYVSEEKGYVSNDTLSPPNTLGRSKNSILGWELKTPCSFPNDMLAIENQCFHDLGYPEMLGKHLSNEHDGRITSTTVMDDAPNPFYARGDSNIRVSNSVLDSNGSDSLIDLKLGRLADNGDAIDMAFCKGTPMLSSSESSTPAKRVRASGLRSQIAYCQVYGCNKDLSSCKDYHKRHRVCEVHSKTATVTVNGIQQRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHSVKAGRLLQPCGDSRFQGTMLTTASYICPEMLPSGVMPSEKYGTSDFWRSNKAEEWTGFKNLSSTPISNGYSQSRSLFPSYNQKQFPFLHENGATSTTGSIFSDHNIQYPPPVLGAQNSGSRSLFQDTTSLGSEDFNIFETTSTVQGLSGISDSCALSLLSSQSQNSSRQSSGVPLANHFVIPSSHSHHYNMSRVSEKMGNNSHALSNRVSDRFPSEMNPADGNHLNPVLIPDNGDGIVNFGMADGIFQGSAFLNVKDYLPREDGATIDLLQLSSQLQRVERQRQPSQVKQENDSFCTLRIT 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1438 536 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 52 536 IPR044817 GO:0003677
Lal19g1438 536 Gene3D - 153 216 IPR036893 GO:0003677|GO:0005634
Lal19g1438 536 MobiDBLite consensus disorder prediction 1 21 - -
Lal19g1438 536 ProSiteProfiles Zinc finger SBP-type profile. 159 229 IPR004333 GO:0003677
Lal19g1438 536 Pfam SBP domain 162 228 IPR004333 GO:0003677
Lal19g1438 536 PANTHER 1 PROTEIN, PUTATIVE-RELATED 52 536 - -
Lal19g1438 536 SUPERFAMILY SBT domain 160 233 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1438 Lal-Chr19 17027809 17031642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1438 113 271 SBP-box Gene Family AT1G69170 49.398 2.55e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal19g1438 SBP 6.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1438 - - gmx:100817547 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1438 19 17027809 17031642 Lal7g1343 7 18632556 18635852 ECH
Lal19g1438 19 17027809 17031642 Lal19g1438 19 17027809 17031642 ECH
Lal7g1343 7 18632556 18635852 Lal19g1438 19 17027809 17031642 LSH