Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1435 ATGCCTTATCTCAATGTTTTATTCGGTGGTTCAACTACAGTTCAAGATTCTGCAGAAATGGCAAAAAAGTCAAATGTCATTTATGATATGTTTGACCTTGATGATCATGCATGTTTTTGCATGGATTCTTCTTCCGCTGCAGTTAGGTTTTCAAGTTCAATTCCTCACACGTTGGTGCCGCTGCGTCTCAAATCCGAATCAGAGGTTGAACTTGTTTTAAGACATCACGTAGCAGAATGTCTGGAAGGTGTTGTTGTACCTGAGCCAGTTGCAGCTGCGTCAATTCCCGGTGAGCCAATGGACATACTGACTGCCTTACAGCTTGTGCTGAGAAAATCACTGGCTTATGGTGGCCTTGCTCGAGGGCTTCATGAAGCTGCTAAAGTGATTGAGAAGCATGCGGCGCAGCTCTGTGTTCTAGCCGAAGATTGTGACCAACCTGACTATGTTAAACTCGTCAAAGCCCTTTGTGCAGAGCACAATGTTAGCCTGCTGACAGTTCCAAGTGCAAAGACCCTTGGAGAGTGGGCTGGTTTGTGTAAGATTGATTCAGAAGGAAAAGCTAGGAAGGTAACTGGATGCTCCTGTGTGGTTGTCAAGGATTTCGGGGAGGAACACGAAGCCTATAATGTTGTTCTGCAGCATTTAAAATTACATACTTTTTGGCATGATATCCCTGTGGTAAATGTGAAATTAGCAGATATGAACGTGATTTTCAACCAGAAGATGGATGGATGCGTTCACCAAGGGGAGGAAGAAAAGGAAAAGCCAAAATTTGGTCCGACTTTTACAGCCCAATTTATTGGACTTTAA 813 0.4367 MPYLNVLFGGSTTVQDSAEMAKKSNVIYDMFDLDDHACFCMDSSSAAVRFSSSIPHTLVPLRLKSESEVELVLRHHVAECLEGVVVPEPVAAASIPGEPMDILTALQLVLRKSLAYGGLARGLHEAAKVIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHLKLHTFWHDIPVVNVKLADMNVIFNQKMDGCVHQGEEEKEKPKFGPTFTAQFIGL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1435 270 SUPERFAMILY L30e-like 99 215 IPR029064 -
Lal19g1435 270 PRINTS Ribosomal protein S12E family signature 109 122 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal19g1435 270 PRINTS Ribosomal protein S12E family signature 123 139 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal19g1435 270 PRINTS Ribosomal protein S12E family signature 164 185 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal19g1435 270 PRINTS Ribosomal protein S12E family signature 189 202 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal19g1435 270 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 105 198 IPR004038 -
Lal19g1435 270 PANTHER 40S RIBOSOMAL PROTEIN S12 82 218 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal19g1435 270 PANTHER 40S RIBOSOMAL PROTEIN S12 82 218 - -
Lal19g1435 270 ProSitePatterns Ribosomal protein S12e signature. 105 123 IPR000530 GO:0003735|GO:0005840|GO:0006412
Lal19g1435 270 Gene3D - 88 218 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1435 Lal-Chr19 17005798 17008655 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1435 95 216 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 76.230 4.09e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1435 K02951 - gmx:100786733 253.832