Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1431 ATGGAGCTTCCTCAAGCGCGTGCCTTAGGAAGGAAACCGACGCATGACTTTCTATCACTGTACGGTAATTCAACTACCCAACAAGATTCAAGGCCACCTTCTCAAGTGTGCACAGGAAGTCGCCTCAAGACCCATGATTTCTTGCAGCCACTAGAACGAGCAGATACTAAAGCCAGTGCCAAGGAAGAAGCCACAGATGAAATATCATCGGTTGCTTCTAAGCCACTTCCTCCAACACCACCTTCTGTCGAGCACCTATTACCTGGAGGAATTGGAACTTACAGTATTAGCCACATTTCCAAATTTAATAATAATCAAAGGGGTCCAAAGCCAGAGGCATCCCTTTTCACTGTGCATCAAGCAAATAGTACCGATAGAAATGATGAAAACTCCAACTGCAGTTCATATACTTCAAGTGGTTTCACTTTGTGGGAAGAGTCTGCGGTTAAGAAGGGAAAGACAGGGAAGGAGAACAATGTGGCCGATAAACCCATTCTAGTAGAGTCTGCGGCGAAGCCAGGGCAGTGGACGTTGAGTGAGCGAACGTCACAGTCGTTTTCTAACAATCGCCACAACAGCTTCAACTCTCGCTCCACCTCTCAGACATCTGGGCAGAAGAACCAGAGCTTTATAGAAATGATGAATTCGGCAGAGGATGGTGCCCAGGATGAAGAACTAGAAAACGAAGAAACATTTTTTCTTAAGAAAGAATTCCAAAGAGAAGAACTGAAAGTGAAAGTGGATGGGAAGAGTACTGAACAAAAGCCAAACACACCAAGATCAAAACATTCTGCAACAGAGCAGCGGAGAAGGAGCAAAATAAATGACAGGCAAGTATTGACTACCACGCTGATAAAAGTTTTTCAAGATCCTTGTTCGGTGCTAGAAGAGGCGCATGGGGATGAAATCTGCTGTATCATTTCATGTGTCAATCCACTTGCCACAACTTTATTCCAGATGCTACGGGAGCTTATTCCACACAGTGATCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATCGAATACATTCATTTTTTACAAGATAAGGTGCATAAGCATGAAGGTCCATTCCAAGAGTGGAATCACGAGTCAGAAAAATTGATGCCATGGAGAAATAATGACAGGCCAGCAGAAAGTTTTGAAACGCGTGGAACAAATAGTGGGTCAGGTCCATCTCCAACATTGTTGTTTGCTTCAAAGACCGACCAGAAAAATATAACCATCTCCCAGACAATTCCTGGAAATACTCAGCATGTAGAATCTGGATTGAACTTATCAACTAACTTCAAGACAATGGATCATCATCCTAGAATAACGAACAACTCTTTTCCAATTCCTATTTCTCCACAGCCTAATTTCTTCATTCCTGCCCAAGGTGGTGGTCTTGGTGGAGTAGTGTCTCAGCTCGCACATGGATTGACATCTGATGCAGAGAGCGGGAGATATCAACATTCAGAGGAGTGTCAGACTATGGCAGCTACAAGTGAAAATTTGAAAGAGAAAGAGCCCACTATGGAAGGCGGTGCCATTAGCATATCACATGCCTACTCAAAAGGATTGTTGGACACACTTAAACATGCGCTTCAGAGTTCAGGAGTGGATTTGTCACAAGCTAGTATCTCAGTGCAAATTGAACTTGGTAAGCAAACAAACATCATACCAACTGTGCCAATGTCAAGGTGCGGTGATAAGGGTGAAGAAGTTCCTTCTAACAGTCAAAGGATGATGCGCTCTAGAGTTGCAGTTGCTAGCTCTGAGAAGTCTGATCAACCAGTGAAGAAGCTAAAGACGTACAGAACCTAA 1809 0.435 MELPQARALGRKPTHDFLSLYGNSTTQQDSRPPSQVCTGSRLKTHDFLQPLERADTKASAKEEATDEISSVASKPLPPTPPSVEHLLPGGIGTYSISHISKFNNNQRGPKPEASLFTVHQANSTDRNDENSNCSSYTSSGFTLWEESAVKKGKTGKENNVADKPILVESAAKPGQWTLSERTSQSFSNNRHNSFNSRSTSQTSGQKNQSFIEMMNSAEDGAQDEELENEETFFLKKEFQREELKVKVDGKSTEQKPNTPRSKHSATEQRRRSKINDRQVLTTTLIKVFQDPCSVLEEAHGDEICCIISCVNPLATTLFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQDKVHKHEGPFQEWNHESEKLMPWRNNDRPAESFETRGTNSGSGPSPTLLFASKTDQKNITISQTIPGNTQHVESGLNLSTNFKTMDHHPRITNNSFPIPISPQPNFFIPAQGGGLGGVVSQLAHGLTSDAESGRYQHSEECQTMAATSENLKEKEPTMEGGAISISHAYSKGLLDTLKHALQSSGVDLSQASISVQIELGKQTNIIPTVPMSRCGDKGEEVPSNSQRMMRSRVAVASSEKSDQPVKKLKTYRT 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1431 602 Gene3D - 256 303 IPR036638 GO:0046983
Lal19g1431 602 Gene3D - 314 370 IPR036638 GO:0046983
Lal19g1431 602 MobiDBLite consensus disorder prediction 1 89 - -
Lal19g1431 602 MobiDBLite consensus disorder prediction 372 394 - -
Lal19g1431 602 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 317 370 IPR036638 GO:0046983
Lal19g1431 602 MobiDBLite consensus disorder prediction 582 602 - -
Lal19g1431 602 CDD bHLH_AtBIM_like 257 373 - -
Lal19g1431 602 MobiDBLite consensus disorder prediction 46 68 - -
Lal19g1431 602 MobiDBLite consensus disorder prediction 172 206 - -
Lal19g1431 602 MobiDBLite consensus disorder prediction 175 206 - -
Lal19g1431 602 Pfam Helix-loop-helix DNA-binding domain 317 349 IPR011598 GO:0046983
Lal19g1431 602 PANTHER TRANSCRIPTION FACTOR BIM1 1 599 - -
Lal19g1431 602 MobiDBLite consensus disorder prediction 245 274 - -
Lal19g1431 602 MobiDBLite consensus disorder prediction 18 42 - -
Lal19g1431 602 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 258 348 IPR011598 GO:0046983
Lal19g1431 602 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 599 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1431 Lal-Chr19 16972807 16981546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1431 1 552 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 41.969 1.18e-100 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal19g1431 HLH 3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1431 - - adu:107468970 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1431 19 16972807 16981546 Lal19g1431 19 16972807 16981546 ECH
Lal14g1875 14 18217811 18226246 Lal19g1431 19 16972807 16981546 LSH
Lal7g1333 7 18551373 18555225 Lal19g1431 19 16972807 16981546 LSH