Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1430 ATGTGTTCCCCAAAGAAACGGTTGAAATCTGAATTGATGGATGATGAGGAACAAGTATGTTGCGGCATTTGCTACGCGGAACGTGAAGGAGATTCAATATCAGGTAAAATCGATTGCTGTAACCACTTCTTCTGTTTCGTATGCATAATGGAATGGGCCAAACACGAATCTCGATGCCCTATTTGTCGCCAAAGATTCTCTATTATTCGAAGACTTTCTAAGCTCGGTTTATTTTCTTCTTCTCGAGACGTTAATATCCCTCTTCGTGATCAGGTTTATCATCGTTATGGAAATATGTCTACTGGTCCTGTTGTTTCTAATGCTCAAGGTGAATGTAGTATCTGTCGTGGTGTCACAGATGAAAGTCTTTTACTACTTTGTGATCTCTGTGACACTGCTTCTCATACATACTGTGTCGGCCTCGGCTATACTGTTCCTGAAGGTGATTGGTTTTGTCCCGATTGTGCTATTTCCGTTGAGGCCAGAGCCAAACAAGAATTGGACCAACAAAGCGTTGATGTTGGTAGAGAATCAAGCGGCCAAGGGATTAGAAGACCTAGAGAATCTCCTTTGCAACAAAACCTCTCATCTCCTTTTGTTATTCCTTTACCTGATAGGGAGAGAAGATTCAAGGGGGGAAATCCTGTTTCAGGCCCCCAACAAGTGCAGCGTAATATACAGGCACTTCGTGAAAATTGGAATGCTTTGAGAAGTGGCTCATTGAGTTTCTGTTCATTTCAATCTAGTGAATCAGGTAGTCATGAACAAGATTCTAGTTTGTCATCTCGTGGCAAATCAAATAAATCACATTCTACAGCTTCCACTAGCCTTCAACAATCCACTGTCCAAGGTGGTTCTTCTTGCAGCATGTTTAATGGGAGAGGCTCGCAAGATGTCGACATGGCTTGGAAAATGCTGGACCGGGCAAAGACGATGCAGAGGACTCGTCAAAGAACAAACAGCGTTCCACTGGGAGTGGATCGTCCTTCATGCAGTGGAGTAGCTAGAAAAATATCAGATGCACGTTGTAATTACCTAGAAATGAAAAATCAACGGTCCAGAACATCGGGCTTAACTTGTGCCAGAATGGAGAAGCAGGGTGCCCAATCTAGTCTCAACCAGAATTTTGAAAATCATTTGTCTACAAGGTCGGAAAAGAGCAATCGAAGCGAGGTCATATGTGAGGACATGATACAATATACAAGGGAGCATACTCATTCAGAAAGATACTATGAACCTCATATGTCCGGAAAGGTCCATGCTAGTATCCAGAATGTTCCGCACCGTGACAATGGAGAGAGAAATGTTGCTAATGAACATAGCTCACCTGCTGGTTTGGCAATCTCAGTAGGCTCAGCTCTCTCTCATGGCAAGTTTGATGGTATATTTTCCTCTATCAGGAATGACCATGTTTTCAACAAAGAAGAGAGTTTAGCTAAAAGCTTTGTGGATGGGAGCACAAGAAAAAATGAAGATGCAAAAACTGAGATCCAGTCTCTTGTTAAGCAAAATCTGAAGGTCTTAACCAGAGATAAACTATTAGATGTTGATACCTTCAAAGTAGTTGCAAGGAAAGCAACCCACACAATCTTGGCTGCTTTAACATCTGAGCTGCAAAAATCAAATGTATACTCCTCAAGCTCAGTATGTAGCCACACTGAACAAACTCAACAGTTTCAGAAATGTACCTTAATATCCAATTGCTGTCAACAATGCTTTTACGACTTTGTAAGCAATGTTGTCAAATCCACCATGTTGGAGAAAGTAGGTGGTCGAGTTTGA 1782 0.4186 MCSPKKRLKSELMDDEEQVCCGICYAEREGDSISGKIDCCNHFFCFVCIMEWAKHESRCPICRQRFSIIRRLSKLGLFSSSRDVNIPLRDQVYHRYGNMSTGPVVSNAQGECSICRGVTDESLLLLCDLCDTASHTYCVGLGYTVPEGDWFCPDCAISVEARAKQELDQQSVDVGRESSGQGIRRPRESPLQQNLSSPFVIPLPDRERRFKGGNPVSGPQQVQRNIQALRENWNALRSGSLSFCSFQSSESGSHEQDSSLSSRGKSNKSHSTASTSLQQSTVQGGSSCSMFNGRGSQDVDMAWKMLDRAKTMQRTRQRTNSVPLGVDRPSCSGVARKISDARCNYLEMKNQRSRTSGLTCARMEKQGAQSSLNQNFENHLSTRSEKSNRSEVICEDMIQYTREHTHSERYYEPHMSGKVHASIQNVPHRDNGERNVANEHSSPAGLAISVGSALSHGKFDGIFSSIRNDHVFNKEESLAKSFVDGSTRKNEDAKTEIQSLVKQNLKVLTRDKLLDVDTFKVVARKATHTILAALTSELQKSNVYSSSSVCSHTEQTQQFQKCTLISNCCQQCFYDFVSNVVKSTMLEKVGGRV 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1430 593 MobiDBLite consensus disorder prediction 247 294 - -
Lal19g1430 593 SUPERFAMILY RING/U-box 14 72 - -
Lal19g1430 593 MobiDBLite consensus disorder prediction 168 221 - -
Lal19g1430 593 Pfam Ring finger domain 21 63 IPR001841 -
Lal19g1430 593 SMART ring_2 112 155 IPR001841 -
Lal19g1430 593 SMART ring_2 21 62 IPR001841 -
Lal19g1430 593 SUPERFAMILY FYVE/PHD zinc finger 100 160 IPR011011 -
Lal19g1430 593 Pfam PHD-finger 112 156 IPR019787 -
Lal19g1430 593 PANTHER F18C1.6 PROTEIN 8 589 - -
Lal19g1430 593 ProSiteProfiles Zinc finger PHD-type profile. 109 158 IPR019787 -
Lal19g1430 593 ProSiteProfiles Zinc finger RING-type profile. 21 63 IPR001841 -
Lal19g1430 593 SMART PHD_3 111 156 IPR001965 -
Lal19g1430 593 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 8 589 - -
Lal19g1430 593 ProSitePatterns Zinc finger RING-type signature. 40 49 IPR017907 -
Lal19g1430 593 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 82 IPR013083 -
Lal19g1430 593 MobiDBLite consensus disorder prediction 185 199 - -
Lal19g1430 593 Coils Coil 483 503 - -
Lal19g1430 593 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 179 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1430 Lal-Chr19 16966479 16969991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1430 103 158 C2H2 Transcription Factor Family AT3G01460 38.596 1.80e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal19g1430 PHD 8.2e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1430 - - lang:109353993 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1430 19 16966479 16969991 Lal19g1430 19 16966479 16969991 ECH