Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1422 ATGACTCTTGAAATAGATAAATCTTATGAGAATCAGAAGGGGAGTGTTATGAAGAATCAAAAAGCATTAAAAAAGAGTGACAAAAAGTTTATTGGTGTGAGAAAAAGACCTTCAGGAAGATGGACTTCTGAGATCAAAGACTCGTCACAGAAACTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAGGCTGCTTTGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGAAGAAATGCCAAAACAAATTTTCCAAATAGCCAAGGAACCATGAACACCTATCATGAGGAAAACTGCATCAATATTTTGGGGAAAAACCCTAGGGCTTTCACACTTCTTAAGCATCATGCAGTCATGAAGAACCATGCAGTTACCTCATCCTTTTATTCCACAATCATGCCTTGGAAAAATCAGACAATGAGAGATGAGTTTGACATGATTGTTGAGGAGACTATAGTGTGCTCCATTCCTGAAATAGGTTCTGAAGGGTGCTGTGGAGTTTCATTTGGAAGTTCTAAGCTCCTACTTTCAGTGCCTCTCAATTTCAAACAGGAGAAGTTCATCAAGAAACCTCCTAATCTTGATCCTATATTGTCTTCTTCTTCTTTGTTGTAG 618 0.3867 MTLEIDKSYENQKGSVMKNQKALKKSDKKFIGVRKRPSGRWTSEIKDSSQKLRLWLGTFDKAEEAALAYDCAARLLRGRNAKTNFPNSQGTMNTYHEENCINILGKNPRAFTLLKHHAVMKNHAVTSSFYSTIMPWKNQTMRDEFDMIVEETIVCSIPEIGSEGCCGVSFGSSKLLLSVPLNFKQEKFIKKPPNLDPILSSSSLL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1422 205 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lal19g1422 205 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Lal19g1422 205 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lal19g1422 205 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lal19g1422 205 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 179 - -
Lal19g1422 205 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Lal19g1422 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 2 179 - -
Lal19g1422 205 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Lal19g1422 205 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
Lal19g1422 205 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1422 Lal-Chr19 16921482 16922121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1422 10 87 AP2-EREBP Transcription Factor Family AT5G19790 57.692 9.40e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal19g1422 AP2 6.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1422 - K09286 gmx:100807374 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1422 19 16921482 16922121 Lal19g1422 19 16921482 16922121 ECH