Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1416 ATGTATTCCTCAAATAGCTCCATCAACGGCAATGACCTAATACCCTACCCTATTCAATTTTACTCCTCTAGGCCATTTTCCATTGAAAGCAACCCAACACAGTTAGAAACACCTAATACATCATGTGCCCTTCTTTCTCCTCCTTTGTCCTTTTTTCATTTCCCTTCTCCCTTTGAAGAAGACCAGCATGATATTTTCCTTGAACAATATCAGTATCACTTACTTAATCACCAACAATCTATAAATGAGTCTGAGACTGTTAATGTTAACATGGAGAATACTAGTATTATTATTCCTGATCATAAAGTAGGACAAGGTACGGAACCACAGATCCCAATAAGAAGATCCAGCAACAAAGATCGGCACAGTAAGATCAAGACAGCAAAAGGACTAAGGGATCGAAGAATGAGATTGTCTCTTTTAGTTGCAAAGAGGTTTTTTGGTCTACAAGACATGCTAGGCTTTGATAAAGCAAGCAAAACTGTGGATTGGTTGCTGAATCAAGCAAAAGTTGAGATCAAGCAGCTAGCAAGAGAGAAGAATATTCATCATCATCATGATGTCAAGAGTGCATCTTCGACTTCGGAATGTACTCAAGCTGTGTCAAGCTTGGATGAGGTTGCATTGAGTGGAAATCATAAGGAACATGTTAAGGGAGTAATAAAGAGAAGAAGGGTTAAGGTTTGTAGAAAAAGTGCATTCAAGCATGTTGGTAAGGAATCAAGGGAAAAGGCAAGAGAAAGAGCAAGAGAAAGGACCAAACAGAAGACAAGGTCTAGGTTGCTAGCCGAAGCTGATGAACCAAAGCAATTTGAAGAGACAACAAAGGATAATCTTCTCCATTGGAATCCCTTTGAAACTGTTGAAGGGTGTGCAGGTACTCAGAGCCAAAGTGCTGATCCCTCCTGGGATGTGATAAATGAGGTTGAAGAACGAAACTCTCAAGGGATGGAGCATTTGGGAACTGAAGAGGGAATAGAGCATGAAAATTCTTTGGTCATTATGAGCAAATGGAGCCCAACCACGATTTTCAATTATTCCTTCACTAACTCAGGAATCCTTCAGGAGCATCATTTTTCAGAATTCCAGTCCATGGGAAAACCTTGGGAGGCTTATAACAAACACAACATCTAA 1134 0.3995 MYSSNSSINGNDLIPYPIQFYSSRPFSIESNPTQLETPNTSCALLSPPLSFFHFPSPFEEDQHDIFLEQYQYHLLNHQQSINESETVNVNMENTSIIIPDHKVGQGTEPQIPIRRSSNKDRHSKIKTAKGLRDRRMRLSLLVAKRFFGLQDMLGFDKASKTVDWLLNQAKVEIKQLAREKNIHHHHDVKSASSTSECTQAVSSLDEVALSGNHKEHVKGVIKRRRVKVCRKSAFKHVGKESREKARERARERTKQKTRSRLLAEADEPKQFEETTKDNLLHWNPFETVEGCAGTQSQSADPSWDVINEVEERNSQGMEHLGTEEGIEHENSLVIMSKWSPTTIFNYSFTNSGILQEHHFSEFQSMGKPWEAYNKHNI 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1416 377 Pfam TCP family transcription factor 117 259 IPR017887 -
Lal19g1416 377 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 59 338 IPR005333 GO:0003700
Lal19g1416 377 MobiDBLite consensus disorder prediction 237 261 - -
Lal19g1416 377 PANTHER TRANSCRIPTION FACTOR TCP18 59 338 - -
Lal19g1416 377 ProSiteProfiles R domain profile. 239 256 IPR017888 -
Lal19g1416 377 ProSiteProfiles TCP domain profile. 118 176 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1416 Lal-Chr19 16864961 16866872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1416 2 277 TCP Transcription Factor Family AT3G18550 35.127 1.66e-29 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lal19g1416 TCP 1.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1416 - - lang:109345082 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1416 19 16864961 16866872 Lal7g1307 7 18425551 18427032 ECH
Lal13g1717 13 16799802 16801271 Lal19g1416 19 16864961 16866872 ECH
Lal24g1302 24 14355925 14357941 Lal19g1416 19 16864961 16866872 ECH
Lal6g1641 6 19134796 19136403 Lal19g1416 19 16864961 16866872 ECH
Lal22g1320 22 16025288 16026476 Lal19g1416 19 16864961 16866872 ECH
Lal19g1416 19 16864961 16866872 Lal19g1416 19 16864961 16866872 ECH
Lal14g1863 14 18152958 18154429 Lal19g1416 19 16864961 16866872 LSH
Lal7g1307 7 18425551 18427032 Lal19g1416 19 16864961 16866872 LSH