Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1414 ATGAGCTGGCGCAGGGTTTTGAAGTCATCACAGGCTTTTGCTGCTCACACCTTTCTCTTTTGCTTCACTCTCTTGCTTGTTTTCAAGCTCGATCACTATGTCTTCTGTTCTTGGTGGATAATATTTTTACCTCTTTGGATGTTTCATGGCGTTGTGGCTCGAGGAAGGTTTTCATTACCGGCGCCATCAGCTCCACGTAATCGACATTGGGCACCATGCCATGCCGTCGTTGCAACACCATTGATTATTGCATTTGAATTGCTTCTTTGTATATATCTTGAGAGCTTATATGTTGATGGCCATGCAGCAGTCAATCTGAAGCTCGTGTTCCTTCCGTTACTAACATTTCAAATCCTTATTCTCATTGATAATTTCAGGGCTCTCATGCCAGGGGATGGAGAAAACATGAGTGATGAGGCAGTATGGGAAACTCTTCCACACTTTTGGGTTGCAATATCCATGGTCTTCTTCATTGCTGCTACGGTCTTCACACTCTTAAAACTGAGTGGTGACGTCGGTGCTTTAGGCTGGTGGGACTTATTTATTAACTTTGCTATCGCTCAGTGCTTTGCTTTTCTTGTGTGTACAAAGTGGTCTAATCCAGTCATTCATAGAAACTCAAGAGAATCCAGTTCATCTTCTACTACAATTAGATATCTTGACTGGAACAGTGGTTTAGTGGTTTCTCCAGAGGAAAATGAACATTCGAACAGAGTGTGCAGCCTACAAGACATAGGAGGTCATTTCATGAAAGTACCAGTTATTGTATTCCAGGTTCTTCTTTGTATGTATTTAGAGGGAACACCTGCTTCTGCTGTATATATACCTCTTCCGGTTCTTTTCTCTCCCATTTTCATACTACAAGGTGCTGGTGTACTGTTATCTGCCTCTAAGTTGGTGGAGAAACTTGTACTTCTACTACGTAGTGGAGCTGGTGGAGGAATGTATTTTAGATTTTCATCAAGAGTTCATGATTGCTTGGGGTTCTTGCACCATGGGTCTAGGTTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGAGAAGAACAGGCACGCTTGTACCAGGAGGGGGCATCTGGGTATAATACATTCTCTGGTTATCCTCCCGAGATTGTTAAGAAAATGCCTAAAAAGGATCTTGCTGAGGAGGTTTGGAGACTCCAGGCAGCTCTCGGTGAGCAGACGGAAATTACAAAGTACAGTCAACAGGAGTATGAAAGACTTCAAAATGAGAAAGTGTTATGCAGAGTTTGCTTTGAGGGAGAAATTAGCGTTGTATTGCTGCCATGTAAGCATCACGCCCTTTGCAGCGCTTGCTCGGAAAAATGTAAGAGGTGCCCAATTTGTCGTGACTCGATCGCAGAACGCTTGCTTGTATATGATGTTTAG 1389 0.4312 MSWRRVLKSSQAFAAHTFLFCFTLLLVFKLDHYVFCSWWIIFLPLWMFHGVVARGRFSLPAPSAPRNRHWAPCHAVVATPLIIAFELLLCIYLESLYVDGHAAVNLKLVFLPLLTFQILILIDNFRALMPGDGENMSDEAVWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAQCFAFLVCTKWSNPVIHRNSRESSSSSTTIRYLDWNSGLVVSPEENEHSNRVCSLQDIGGHFMKVPVIVFQVLLCMYLEGTPASAVYIPLPVLFSPIFILQGAGVLLSASKLVEKLVLLLRSGAGGGMYFRFSSRVHDCLGFLHHGSRLLGWWSIDEGSREEQARLYQEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCKHHALCSACSEKCKRCPICRDSIAERLLVYDV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1414 462 SMART ring_2 415 449 IPR001841 -
Lal19g1414 462 ProSiteProfiles Zinc finger RING-type profile. 415 450 IPR001841 -
Lal19g1414 462 Pfam Transmembrane Fragile-X-F protein 29 287 IPR019396 -
Lal19g1414 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 391 460 IPR013083 -
Lal19g1414 462 Pfam Zinc finger, C3HC4 type (RING finger) 412 454 - -
Lal19g1414 462 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 462 - -
Lal19g1414 462 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 462 - -
Lal19g1414 462 SUPERFAMILY RING/U-box 406 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1414 Lal-Chr19 16844396 16851256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1414 1 462 C3H Transcription Factor Family AT1G73950 70.538 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1414 - - gmx:100791390 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1414 19 16844396 16851256 Lal19g1414 19 16844396 16851256 ECH
Lal14g1861 14 18142591 18150425 Lal19g1414 19 16844396 16851256 LSH