Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1410 ATGGTGGCAACTGCTGTCACTGCTTCGTTTTTCCCTGTTACTTCAACCTCACCAGACTCCGGTGCAGGAGGCAACAAACATGGTGATGGGCCCACAAACCTTGGAGGATTCAAATCCAAATACGCGTCTTCTCGTGGCTTGAAAATTAAGGTAAATTCTCAAGCCCCTCCCAAGATTAATGGAACCGCAGTTACTACATCTGTAGAAACCTACAAGCATGATGATGATTTGCCATCGCCTCCTCAAAGGACTTTTATCAACCAGTTGCCTGATTGGAGCATGCTTCTAGCTGCTATCACAACAATTTTCCTGGCAGCTGAAAAACAGTGGATGATGCTTGATTGGAAGCCAAGGCGGACTGATATGCTTATTGACGACCCCTTTGGCATAGGAAAAATTGTTCAGGATGGTATGGTGTTCCGTCAAAACTTTTCTATTAGATCATATGAAATAGGTGCTGATCGAACAGCATCTATAGAGACAGTACTGAATCATTTGCAGGAAACCGCAATTAATCATGTTAAAACTGTTGGGCTTCTTGGTGATGGCTTTGGTTCTACGCCTGAGATGTGCAAAAAGAACCTGATATGGGTTGTTACGCGGATGCAGGTTGCAGTTGATCGTTATCCTACATGGGGTGATGTTGTTCAAGTAGACACTTGGGTTTCTGCATCAGGGAAGAATGGTATGCGTCGTGATTGGCTTTTACGTAACTGCAAAACTGGTGAAATATTGACGAGAGCCTCCAGTATCTGGGTCATGATGAATAAGCTGACAAGGAGGCTGTCTAAAATTCCGGCAGAAGTCAGAGAGGAGATTGGCTCTTATTTTGTGAATTCTGCTCCAATTTTTGAAGAGGATAACAGAAAACTACCTAAACTGGATGACAATACAGCAGACTATATTCGTACTGGCTTGAGTCCTAGATGGAATGATCTGGATATCAACCAGCATGTTAACAATGTGAAGTACATTGGCTGGATTCTGGAGAGTGCTCCGCAGTCAATCTTAGAGAGTCATGAGCTGTCTGCCATGACTCTGGAGTATAGGAGGGAATGTGTTAGGGACAGTGTGCTGCAGTCCCTGACTTCCATATCCGGTGCAGATGTCGGCACTCTAGATCACAGTGGACATGTTGACTGCAAACATTTGCTTCGACTTGAAGATGGTGCTGAAATTGTGAGGGGTAGGACTGAGTGGAGGCCCAAACCTGTGAACAACATTGGTATTGTGAATCAAGTTCCAGCAGAGAGCACGTAA 1260 0.446 MVATAVTASFFPVTSTSPDSGAGGNKHGDGPTNLGGFKSKYASSRGLKIKVNSQAPPKINGTAVTTSVETYKHDDDLPSPPQRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRTDMLIDDPFGIGKIVQDGMVFRQNFSIRSYEIGADRTASIETVLNHLQETAINHVKTVGLLGDGFGSTPEMCKKNLIWVVTRMQVAVDRYPTWGDVVQVDTWVSASGKNGMRRDWLLRNCKTGEILTRASSIWVMMNKLTRRLSKIPAEVREEIGSYFVNSAPIFEEDNRKLPKLDDNTADYIRTGLSPRWNDLDINQHVNNVKYIGWILESAPQSILESHELSAMTLEYRRECVRDSVLQSLTSISGADVGTLDHSGHVDCKHLLRLEDGAEIVRGRTEWRPKPVNNIGIVNQVPAEST 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1410 419 MobiDBLite consensus disorder prediction 14 35 - -
Lal19g1410 419 PANTHER PALMITOYL-ACYL CARRIER PROTEIN THIOESTERASE, CHLOROPLASTIC 1 408 - -
Lal19g1410 419 Pfam Acyl-ACP thioesterase 137 401 IPR002864 GO:0006633|GO:0016790
Lal19g1410 419 CDD 4HBT 140 256 - -
Lal19g1410 419 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 300 405 IPR029069 -
Lal19g1410 419 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 1 408 IPR045023 GO:0006633|GO:0016297
Lal19g1410 419 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 134 286 IPR029069 -
Lal19g1410 419 Gene3D Hotdog Thioesterase 130 407 - -
Lal19g1410 419 Pfam Acyl-ATP thioesterase 1 125 IPR021113 GO:0016790
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1410 Lal-Chr19 16806173 16811215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1410 1 403 Acyl Lipid Metabolism Gene Families AT1G08510 74.138 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1410 K10781 - gmx:100170693 736.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1410 19 16806173 16811215 Lal19g1410 19 16806173 16811215 ECH
Lal14g1856 14 18112056 18117209 Lal19g1410 19 16806173 16811215 LSH
Lal7g1300 7 18364756 18369797 Lal19g1410 19 16806173 16811215 LSH