Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1409 ATGTTAAAGCAAATCCTTAGCAAATTGCCAAAGAAGGTGACAAAATCTGAATCACCAGATTCCTCAAGGGGGGATTCTGGCAATACTACTAGTTTTGGAAATGTCTTTCAATGTACAAATGTTGGAAGTACCATTTCTAGCAAATTAAATGTTGTGAAGCGCGTTTCTTCGGTTGTTTTCCCTTCAAGCTTGAATGTGGGAGTTGAAGCAGTTGACCCTTGTTTATCCTTCAAAGACGTTTCAAATACACAGAAACAAAGCCTTTTTATTAGTAAGTTGGACCTTTGCTGCAAAGTTTACGATATGAGTGATCTTGATAAGAACTGCACAGAGCAAGATTTTAAGCGTCAAACATTGGTAGACCTTGTTGATTTTGTTTCCTCTGGATCTGTGAAGTTCACAGAACCAGCAGTTACGGCATTGTGTAAAATGTGTGCAACTAATTTGTTCAGGGTTTTCCCACCCAAGTTTCGCACAAGTACTTCTGGTGGGGAAACAGAAGATGAGGAGCCTACGTTTGATCCTTCCTGGTATCACTTGCAAATTGTTTATGAGCTACTCCTTCAATTCATTAATTATAATTCTCTTGATTTGAAGGTGGCAAAAATGCATATGGACCATGCTTTCGTTTTAAGATTACTTGACCTTTTTGAGTCCGACGACCCTAGAGAAAGAGATTGCTTGAAAACAATTATGCATAGGATCTATGGGAAATTCATGGTTCACAGGCCTTTCATACGAAAATCTGTTAGCAATATCATCTATCGTTTTGTTTTTGAGACTGAACGACACAATGGCATTACTGAACTATTGGAGATTTTTGGGAGTGTGATTAGTGGATTTGCCTTGCCATTGAAGGAAGAGCACAGAATGTTTTTGTGCAAGGCTTTAATTCCTTTGCACAAACCTAAGTCTGTTGGTATTTATCATCAGCAGTTAACATACTGTGTTGTACAGTTTATAGATAAGGATCAAAGACTTGCTAGCCCTGTGATAAAGGGATTATTAAAGTACTGGCCATTAACAAATAGCCAAAAGGAGCTTATGTTCATAAGTGAGTTGGAAGAGATTTTGGAAATGACTAGCATGGCTGAATTTCAGAAGATTATGGTCCCACTGTTTCGACGGATAAGTTGCTGTCTTAATAGTTCTCATCACCAGGTAGCTGAAAGAGCTCATTTGCTGTGGAACAATGAGCACATCCTTAATCTTATCACACAAAACCGGCAGGTGATTCTGCCACTTGTTTTCTCGGCACTTGTAAATAACACAAAAAGTCACTGGAATCAAGCAGTGCTGAACCTGACTCAGAACATAAGGAAGATGCTTTCTCAAATGGATGAGGAACTGGTACTCGCATGCCAACGCAAATTCGACGAGGAAGATTCAGGGTCAAGTGCTGCAGCTGAGAGAAGAAGAGTAACATGGGAACGCTTAGAAGCTGCTGCAAAAAGTGACCAACCTGTAGTTGCTGGTGATGTTATAGTTCCAGTAAGATCATCTGCTACATGCTCTGTGGCTTGTTAA 1527 0.3969 MLKQILSKLPKKVTKSESPDSSRGDSGNTTSFGNVFQCTNVGSTISSKLNVVKRVSSVVFPSSLNVGVEAVDPCLSFKDVSNTQKQSLFISKLDLCCKVYDMSDLDKNCTEQDFKRQTLVDLVDFVSSGSVKFTEPAVTALCKMCATNLFRVFPPKFRTSTSGGETEDEEPTFDPSWYHLQIVYELLLQFINYNSLDLKVAKMHMDHAFVLRLLDLFESDDPRERDCLKTIMHRIYGKFMVHRPFIRKSVSNIIYRFVFETERHNGITELLEIFGSVISGFALPLKEEHRMFLCKALIPLHKPKSVGIYHQQLTYCVVQFIDKDQRLASPVIKGLLKYWPLTNSQKELMFISELEEILEMTSMAEFQKIMVPLFRRISCCLNSSHHQVAERAHLLWNNEHILNLITQNRQVILPLVFSALVNNTKSHWNQAVLNLTQNIRKMLSQMDEELVLACQRKFDEEDSGSSAAAERRRVTWERLEAAAKSDQPVVAGDVIVPVRSSATCSVAC 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1409 508 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT 1 506 - -
Lal19g1409 508 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 506 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lal19g1409 508 PIRSF PP2A_B56 4 503 IPR002554 GO:0000159|GO:0007165|GO:0019888
Lal19g1409 508 MobiDBLite consensus disorder prediction 1 28 - -
Lal19g1409 508 SUPERFAMILY ARM repeat 86 461 IPR016024 -
Lal19g1409 508 Gene3D - 82 482 IPR011989 -
Lal19g1409 508 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 76 483 IPR002554 GO:0000159|GO:0007165|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1409 Lal-Chr19 16800560 16804349 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1409 K11584 - gmx:100786778 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1409 19 16800560 16804349 Lal19g1409 19 16800560 16804349 ECH
Lal14g1856 14 18112056 18117209 Lal19g1409 19 16800560 16804349 LSH
Lal7g1168 7 17501709 17507606 Lal19g1409 19 16800560 16804349 LSH
Lal7g1299 7 18358717 18362260 Lal19g1409 19 16800560 16804349 LSH