Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1406 ATGGCATCATCATCACCATCCCATATGTTACTCAAATCATTTGTGGATCAGAATAGTGATCATACTTACAAGCTTCAAGACTTCCTTTCTCGACTTGAGGAAGAACAACTCAAGATTGATGCCTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCACTAATGCTATGGAGGCTTCAAGGCAGCAACTTCAGGTGTGCAGAGTAAATCAAGGGACAAGTGCAGTTCTGGAAGAGTTCATACCAATAAAACATTCAACCTCTGAAAGCAGTTCTGCTGAAAAGAAAACAACCTTAACTGATAACAAGGCAAATTGGATGACTTCTGCTCAATTATGGAGCCAAGCAAGTGAAGGAACAAAACAACAATCCACAATAATCACACCATCTCCTAAAGAAACAGTTGATAATATTGGCTTCATCAGCATGAGCCCTAATATAGTTTCAGACAACAACAACAACAACAAACATAGGAATCATAATGGTGGAGGAGGAGGAGCTTTCCTTCCATTCTCAAAAGAAAGAAACTCCCCCCAGGTTTCTGCTTTGAGTGTTCTTCCTGAATTGGCTCTTGCCTCTGTGGAGAATGAAAATGAGGATAAGAAATGTGCAGAGCCATTTCAGAAGAGGGAGAATTCAAGCAACAGTGGCAGTGATGTAATGATAGTTGATCAAGGAAAAGGGTCATCTCATGCACAAAACACAGCAACCACAACTACTACTAATCAAACTCATAGGAAAGCAAGAAGGTGCTGGTCACCAGAATTGCACCGTCTATTTGTTAACGCTCTTCAAATGCTTGGTGGTTCTCAAGTGGCCACTCCAAAACAGATTAGGGAGTTGATGAAGGTTGAGGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATCGGCTTCACACCAGAAGACCCAGTCCAAGTCCACAAACTGGTGCACCATCACAACTTGTGGTCCTAGGAGGAATCTGGGTCCCACCTGAATACACCACCGCAGGCGCGCCTACACTCTATGGCACGCACCCTATCTCCCATGCACCACCACCACACTACTCGGTACCTCAAGAGTTCTACAACGCAGCGCCACCGCAGCAGCTGCTTCAACCTCCTCAGAGCCACAACTTCTTGCATCAACACCACAACCATGAATTCATGCATCACGTGTACAAGACGGCACAGCAGATGCAAAGTTCACCGGAATCTAATGTTGAAGGAGCTTCAGAGAGTATAGAGGACGGGAAATCGGAGAGTAGCAGCTGGAAGGGGGAGAGTGGTGAGAATGAAGGAGAGATGAAAAGAGTGCCGATTGAAGAGAGTAATGGGAGTGAGATCACTCTCAAATTTTAG 1350 0.4467 MASSSPSHMLLKSFVDQNSDHTYKLQDFLSRLEEEQLKIDAFKRELPLCMQLLTNAMEASRQQLQVCRVNQGTSAVLEEFIPIKHSTSESSSAEKKTTLTDNKANWMTSAQLWSQASEGTKQQSTIITPSPKETVDNIGFISMSPNIVSDNNNNNKHRNHNGGGGGAFLPFSKERNSPQVSALSVLPELALASVENENEDKKCAEPFQKRENSSNSGSDVMIVDQGKGSSHAQNTATTTTTNQTHRKARRCWSPELHRLFVNALQMLGGSQVATPKQIRELMKVEGLTNDEVKSHLQKYRLHTRRPSPSPQTGAPSQLVVLGGIWVPPEYTTAGAPTLYGTHPISHAPPPHYSVPQEFYNAAPPQQLLQPPQSHNFLHQHHNHEFMHHVYKTAQQMQSSPESNVEGASESIEDGKSESSSWKGESGENEGEMKRVPIEESNGSEITLKF 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1406 449 Coils Coil 25 45 - -
Lal19g1406 449 MobiDBLite consensus disorder prediction 209 247 - -
Lal19g1406 449 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 8 449 - -
Lal19g1406 449 MobiDBLite consensus disorder prediction 408 438 - -
Lal19g1406 449 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 449 IPR044787 GO:0003700|GO:0006355
Lal19g1406 449 SUPERFAMILY Homeodomain-like 244 305 IPR009057 -
Lal19g1406 449 Gene3D - 246 304 - -
Lal19g1406 449 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 247 302 IPR006447 GO:0003677
Lal19g1406 449 MobiDBLite consensus disorder prediction 393 449 - -
Lal19g1406 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 304 IPR017930 -
Lal19g1406 449 MobiDBLite consensus disorder prediction 196 249 - -
Lal19g1406 449 MobiDBLite consensus disorder prediction 154 173 - -
Lal19g1406 449 Pfam Myb-like DNA-binding domain 249 300 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1406 Lal-Chr19 16773038 16775652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1406 9 449 G2-like Transcription Factor Family AT2G03500 46.781 8.87e-105 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal19g1406 Myb_DNA-binding 3.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1406 - - gmx:100807925 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1406 19 16773038 16775652 Lal19g1406 19 16773038 16775652 ECH
Lal7g1293 7 18309377 18311988 Lal19g1406 19 16773038 16775652 LSH