Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1405 ATGGAGAAGAAAAAAGTAGCAGTTCCACTTGTGTGCCATGGTCACTCTCGCCCAGTGGTCGATCTCTTCTATAGTCCTGTTACCCCCGATGGCTTCTTCCTCATCAGCGCAAGCAAGGATTCTAGTCCTATGCTCAGAAATGGTGAGACTGGGGATTGGATTGGAACATTTGAAGGCCATAAAGGTGCTGTGTGGAGTTGCTCCTTGGATACTAATGCCTTACGTGCTGCATCTGCTTCTGCTGATTTCTCAACGAAAGTTTGGGATGCATTAACAGGAGATGAATTGCACTCTTTTGAACATAAGCACATTGTTCGTGCATGTGCTTTTTCTGAGGTAGGTTTGGCGTGTTATTTTGCTGTTATCATAGTTTTCAAAACTGGACCAACTGGTTCAATAGAGTTAACTTGGAGCAGGTTCATTGACCGGTCTGATAGAGCCACTGGGCTCAATGATACACACCTCTTGCTCACTGGAGGAGTAGAGAAAATTCTCCGAATCTATGATATGAATCAGCCTGATGCACCACCCAGAGAAGTGGATAAATCCCCTGGTTCCATCAGAACTGTTGCATGGCTTCATAGTGACCAGACAATTTTGAGTTCTTGTAGTGATATGGGAGGTGTCAGGTTATGGGATGTAAGGAGTGGCAAAATAGTCCAAACTCTTGAGACCAAGTCATCTGTGACAAGTGCTGAAGTGAGTCAGGATGGCCGCTATATTACAACTGTTGATGGTTCCACTGTCAAGTTTTGGGATGCAAATCACTATGGATTGGTGAAGAGCTATGATATGCCCTGCACCATGGAGTCTGCATCATTGGAGCCAAAGTATGGGAACAAGTTCGTTGCTGGGGGAGAAGACATGTGGGTTCATGTTTTTGATTTCCATACAGGCAATGAGATTGCATGCAACAAGGGCCACCATGGTCCTGTCCACTGTGTCCGTTTCTCTCCTGGAGGAGAATCATATGCCTCAGGATCTGAGGATGGAACCATCAGAATATGGCAGACAGGCCCATTATCTGATGATGCATCATCGGAGGCTGTACCTGAAAATGGATCAATTGAAAAGGCGATGAAGGTAACTGCTGATGAGGTTTCACATAAGATACAAGGTTTTCATATTGAAGATGAGGGGAAATCCAAAGAAAAGGAAGAGGCTGGGGAGTAA 1173 0.451 MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCSLDTNALRAASASADFSTKVWDALTGDELHSFEHKHIVRACAFSEVGLACYFAVIIVFKTGPTGSIELTWSRFIDRSDRATGLNDTHLLLTGGVEKILRIYDMNQPDAPPREVDKSPGSIRTVAWLHSDQTILSSCSDMGGVRLWDVRSGKIVQTLETKSSVTSAEVSQDGRYITTVDGSTVKFWDANHYGLVKSYDMPCTMESASLEPKYGNKFVAGGEDMWVHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLSDDASSEAVPENGSIEKAMKVTADEVSHKIQGFHIEDEGKSKEKEEAGE 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1405 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 305 337 IPR001680 GO:0005515
Lal19g1405 390 Gene3D - 9 134 IPR015943 GO:0005515
Lal19g1405 390 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Lal19g1405 390 Pfam WD domain, G-beta repeat 218 253 IPR001680 GO:0005515
Lal19g1405 390 Pfam WD domain, G-beta repeat 304 336 IPR001680 GO:0005515
Lal19g1405 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 57 89 - -
Lal19g1405 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Lal19g1405 390 PANTHER OS02G0205400 PROTEIN 1 386 - -
Lal19g1405 390 SUPERFAMILY WD40 repeat-like 5 339 IPR036322 GO:0005515
Lal19g1405 390 SMART WD40_4 256 295 IPR001680 GO:0005515
Lal19g1405 390 SMART WD40_4 92 169 IPR001680 GO:0005515
Lal19g1405 390 SMART WD40_4 216 253 IPR001680 GO:0005515
Lal19g1405 390 SMART WD40_4 298 337 IPR001680 GO:0005515
Lal19g1405 390 SMART WD40_4 173 213 IPR001680 GO:0005515
Lal19g1405 390 SMART WD40_4 50 89 IPR001680 GO:0005515
Lal19g1405 390 SMART WD40_4 5 47 IPR001680 GO:0005515
Lal19g1405 390 MobiDBLite consensus disorder prediction 367 390 - -
Lal19g1405 390 Gene3D - 272 366 IPR015943 GO:0005515
Lal19g1405 390 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 386 - -
Lal19g1405 390 Gene3D - 135 271 IPR015943 GO:0005515
Lal19g1405 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 305 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1405 Lal-Chr19 16765393 16771365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1405 9 335 Eukaryotic Initiation Factors Gene Family AT2G46290 27.746 3.86e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1405 K13137 - gmx:100782712 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1405 19 16765393 16771365 Lal19g1405 19 16765393 16771365 ECH
Lal7g1289 7 18260879 18266874 Lal19g1405 19 16765393 16771365 LSH