Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1404 ATGGTAGCGTCAATTTCGCTGTGTGGCGAACCAAGGGTTCAAAACCAGTCAAGGGATGGTAGCCAACAATACAATCTGTCAACAGAAATATTACCTTCTCTGGGTGCCACAAGTAACCGCAGACTTATCCTCAAATCATTCATTATATCCCCTTATGACCGCCGTTACAGGGCATGGGAATTATTCCTGATTCTTCTAGTGTTCTACACAGCTTGGGTATCTCCATTTGAATTTGGATTCCTTATGAAACCAAAAGCACCACTATCCATTGTTGATAACGTTGTCAATTTTTTCTTTGCGGTGGATATAGTTCTCACTTTCTTTGTGGCTTACATCGACAAAACTACCTATTTGTTTGTTGATGATCACAAACAGCTTGCTTGGAAATATACAAGAACTTGGTTGGTCTTTGATGTTATCTCTACCATTCCTTCTGAAGTTATTGAAAAATTGTCACCTAAATCTCTCCAATCTTATGGCTTATTCAATATGCTGCGCCTTTGGCGTCTTAGAAGAGTTAGCGCCTTGTTTTCTAGGTTGGAAAAGGATAGAAACTATAACTATTTCTGGGTTAGGTGTATTAAGCTTCTCTGTGTTACCGTTTTTTACGTTCATTGTGCTGGGTGCTTTTTTTATCTTATTGCTGCACGCTATCATACCCCCACAAGGACATGGATTGGGTCAACAATGGAGAATTTTCATGATGAAAGTTTGTGGACCAGATATGTGCCATCCATTTACTGGTCTATTACTACTTTAACAACAGTTGGCTATGGAGATTTGCATCCGGTGAACACAGGAGAAATGTTCTTTGACATCATTTACATGCTTTTGAATTTGGGATTAACAGCATATCTTATTGGTAATATGACCAACTTAGTTGTCCATGGCACAAGTCGAACCATAGACTTTAGAGATACCATACAAGCTGCATCAAGTTTTTCTCAAAGAAATCATTTGCCAGCCCGTTTGCAAGACCAAATGCTTGCTCATTTGTCTTTGAAGTTTAGAACAGACTCAGAGGGGTTGCAGCAACAAGAGACCCTTGCTTCTCTTCCTAAAGCCATCAGATCAAGCATTTCACATTATCTTTTTTATTCATTGGTAGATACGGTCTACTTGTTTCGCGGGGTTTCAAAAGACTTGTTGTTTCAATTGGTCTCAGAGATGAAAGCTGAGTATTTTCCTCCAAAAGAAGATGTCATCTTGCAGAATGAAGCCCCCACTGATTTTTATATACTAGTAACTGGAGCTGCGGACTTGGTGGTTCTTAAAAATGGAGTTGAACATGTTGCTGGAGAGGCAAAAACAGGCGATATTTGCGGTGAGATTGGTGTGCTTTGCTATAAGCCACAACTCTTCACTGTCCGAACGAAGCGATTAAGCCAGCTACTCAGGCTGAACCGTACTACGTTCTTCAATCTTATTCAAGCTTATGTAGGAGACGGAACCATAATCATGAATAACCTACTTCAGCATTTAAAAGAGGTCAAGGACCCAGTCATGCATAGTGTTTTGGTGGAGATTGAGAACATGATAGCCAGTGGGAAGATAGACCTACCTGTGAGTCTCTGTTTTGCAGCATTAACAGGAGATGACTTATTGTTACATCAATTGTTGAAACGGGGTTTGGATCCAAATGATCCTGACAACAATGGAAGGACAGCTTTGCATATAGCAGCATCCAAAGGATATGAGAACTGTGTCTCGCTTCTGTTGGATCATGAGGCTGATCCTAACGTTAGAGATTCTGATGGTAATGTACCACTTTGGGAGGCTATACTTGGTGGACATGAATCAGTGAGAAATGTGCTAGTAGAAAATGGAGCAAGATTGAAATATGGGGACATGGGTAAATTTGCATGCACTGCCGCGGAACAGAACAACCTCAACTTGCTCAAGGACATAATACGCTACAGCGGAGATATTACAGTCCCTAGTAGCACCACAGGAACCACAGCTCTGCATATTGCAGTGTCCGAAGACAATGTGGAGATTGTCAAATTCCTTTTGGAACATGGTGCTGCCATTGACAAACCAGACTTACATGGTTGGACTCCTAGAGCTCTTGCAGAACAACAAGGACAAGTAGATATTAAAGCCATTTTTGAGTCCACTGTGGAGCCTAAGCCTCAATCTTTTGTATCTATTCCTGTGAGACAAACTGAGGACAGGTACCTTGGAAGATTAAACAGTGAGCCAACAATGCCTTTGTCCAATGATGCCTTATTTCGTGCAACAGATGGGTCTTGGAGGCAAAGCAGTCCGAGGCGTAGAACAAATAACTTCAATAACTCACTCTTCGGGATAATGTCAGCTGCAAGCAAAAGGGAAAATAACTTGCTTTTCTCTCCTAACTTTGATAATGCTGCTGCAAAGGATGGCATGAGAAAAAGAGTTAGCTCAAGTAGAGTAACAATTAGTTGCCCTGAGAAGGGTGAGGTTGCTGGGAAGCTTGTGTTTCTACCTGGAAGCTTCCACGAGCTAATTGAGATTGGAGCTAAGAAATTTGGTATCTTTCCTGCTAAGGTGATGTGCAAAGATGGAGCTGAGATTGAAGATATAGAAGTGATCAGAGATGGTGACCATCTTGTTTTTGTTAGTGCTTAG 2610 0.4126 MVASISLCGEPRVQNQSRDGSQQYNLSTEILPSLGATSNRRLILKSFIISPYDRRYRAWELFLILLVFYTAWVSPFEFGFLMKPKAPLSIVDNVVNFFFAVDIVLTFFVAYIDKTTYLFVDDHKQLAWKYTRTWLVFDVISTIPSEVIEKLSPKSLQSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCIKLLCVTVFYVHCAGCFFYLIAARYHTPTRTWIGSTMENFHDESLWTRYVPSIYWSITTLTTVGYGDLHPVNTGEMFFDIIYMLLNLGLTAYLIGNMTNLVVHGTSRTIDFRDTIQAASSFSQRNHLPARLQDQMLAHLSLKFRTDSEGLQQQETLASLPKAIRSSISHYLFYSLVDTVYLFRGVSKDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAADLVVLKNGVEHVAGEAKTGDICGEIGVLCYKPQLFTVRTKRLSQLLRLNRTTFFNLIQAYVGDGTIIMNNLLQHLKEVKDPVMHSVLVEIENMIASGKIDLPVSLCFAALTGDDLLLHQLLKRGLDPNDPDNNGRTALHIAASKGYENCVSLLLDHEADPNVRDSDGNVPLWEAILGGHESVRNVLVENGARLKYGDMGKFACTAAEQNNLNLLKDIIRYSGDITVPSSTTGTTALHIAVSEDNVEIVKFLLEHGAAIDKPDLHGWTPRALAEQQGQVDIKAIFESTVEPKPQSFVSIPVRQTEDRYLGRLNSEPTMPLSNDALFRATDGSWRQSSPRRRTNNFNNSLFGIMSAASKRENNLLFSPNFDNAAAKDGMRKRVSSSRVTISCPEKGEVAGKLVFLPGSFHELIEIGAKKFGIFPAKVMCKDGAEIEDIEVIRDGDHLVFVSA 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1404 869 Pfam Ankyrin repeats (3 copies) 524 612 IPR002110 GO:0005515
Lal19g1404 869 Pfam Ankyrin repeats (3 copies) 624 699 IPR002110 GO:0005515
Lal19g1404 869 PRINTS Ankyrin repeat signature 553 568 IPR002110 GO:0005515
Lal19g1404 869 PRINTS Ankyrin repeat signature 666 680 IPR002110 GO:0005515
Lal19g1404 869 Pfam Cyclic nucleotide-binding domain 394 479 IPR000595 -
Lal19g1404 869 Gene3D - 56 295 - -
Lal19g1404 869 SMART ANK_2a 552 581 IPR002110 GO:0005515
Lal19g1404 869 SMART ANK_2a 650 679 IPR002110 GO:0005515
Lal19g1404 869 SMART ANK_2a 519 548 IPR002110 GO:0005515
Lal19g1404 869 SMART ANK_2a 585 614 IPR002110 GO:0005515
Lal19g1404 869 Gene3D Jelly Rolls 339 499 IPR014710 -
Lal19g1404 869 ProSiteProfiles cAMP/cGMP binding motif profile. 374 476 IPR000595 -
Lal19g1404 869 SUPERFAMILY Ankyrin repeat 521 703 IPR036770 -
Lal19g1404 869 SUPERFAMILY Voltage-gated potassium channels 51 294 - -
Lal19g1404 869 PANTHER POTASSIUM CHANNEL AKT1 14 868 IPR045319 GO:0005249|GO:0006813
Lal19g1404 869 PANTHER K+ TRANSPORTER 1-RELATED 14 868 - -
Lal19g1404 869 SMART cnmp_10 374 491 IPR000595 -
Lal19g1404 869 ProSiteProfiles Ankyrin repeat region circular profile. 650 681 - -
Lal19g1404 869 ProSiteProfiles Ankyrin repeat profile. 552 584 IPR002110 GO:0005515
Lal19g1404 869 Pfam Ion transport protein 57 300 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal19g1404 869 ProSiteProfiles KHA domain profile. 804 869 IPR021789 -
Lal19g1404 869 SUPERFAMILY cAMP-binding domain-like 299 494 IPR018490 -
Lal19g1404 869 ProSiteProfiles Ankyrin repeat profile. 650 682 IPR002110 GO:0005515
Lal19g1404 869 PRINTS EAG/ELK/ERG potassium channel family signature 69 76 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal19g1404 869 PRINTS EAG/ELK/ERG potassium channel family signature 92 102 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal19g1404 869 PRINTS EAG/ELK/ERG potassium channel family signature 103 112 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal19g1404 869 PRINTS EAG/ELK/ERG potassium channel family signature 242 259 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal19g1404 869 PRINTS EAG/ELK/ERG potassium channel family signature 268 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal19g1404 869 PRINTS EAG/ELK/ERG potassium channel family signature 286 295 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lal19g1404 869 CDD CAP_ED 374 479 IPR000595 -
Lal19g1404 869 Gene3D - 520 704 IPR036770 -
Lal19g1404 869 ProSiteProfiles Ankyrin repeat region circular profile. 552 583 - -
Lal19g1404 869 Pfam KHA, dimerisation domain of potassium ion channel 804 866 IPR021789 -
Lal19g1404 869 ProSiteProfiles Ankyrin repeat profile. 585 617 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1404 Lal-Chr19 16758806 16764513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1404 105 868 Ion Channels AT2G26650 67.620 0.0 1071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1404 K21867 - gmx:100819491 1318.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1404 19 16758806 16764513 Lal19g1404 19 16758806 16764513 ECH
Lal7g1286 7 18247704 18256981 Lal19g1404 19 16758806 16764513 LSH