Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1401 ATGGAGGACAGAAAAGTGATAACAATTGCTGTTGTGTCAGTGATTACACTGGTCATAGTTATCATAGTTGCTCGTGTCAAATTGGAGTTGTCTAAGGCCTTCTTCCTCATTCTTGGTGCTGATGTTGCTGGAATCCTTGCTGTGTTTTCATTTGTTTTAATCAGACAACGTTACAAAATTAGGAGGAATTTGATGGAATCAAGGTTGAGATCAGAAGGCAGAGAACTTAGAATAGAGTACAGTTTCCTAAGAAAAGTTGCTGGTGTTCCAACAAAATTTCGATACAAGGAGCTTGAGGAAGCAACAAATAAGTTTCAAGCACTTATAGGAAAAGGGTCATCTGCTTCAGTCTTCAAAGGAATTCTCAAAGATGGTACTTCAGTAGCTGTGAAAAGAATTGATGGAGAAGAAAGAGGAGAAAGAGAGTTCAGATCAGAAGTTGCAGCTATTGCTGGTGTTCAACATGTTAACCTTGTTAGACTATTTGGTTATTGCAATGCTCCTTCAGCTCCTAGGTACCTTGTTTATGAGTATGTCCCAAATGGTTCTTTGGATTGTTGGATTTTTCCTTCAAATGATTTAACTAATAGGCGTGTTGGTGGGTGCTTGCCATGGAACTTGAGGTATAGAGTGGCAATTGATGTTGCTAAGGGACTTAGTTATCTTCAACATGATTGTAGATCAACAATCTTACACCTTGATGTGAAGCCAGAGAATATACTTTTAGATGAGAGTTATAGAGCACTTGTTTCTGATTTTGGTCTCTCAAAGCTTGTTGGAAAAGATGTGAGCAGAGTCATGACTAACATTAGAGGAACAAGGGGGTATTTAGCACCTGAGTGGCTCTTAGAGATGGGAGTTTCTGAGAAAACTGATATCTATAGCTATGGGATGGTTCTGTTGGAGATAATTGGAGGGAGAAGGAATGTGTCAAGGGTAGAAGATGCCAAGGATAAGTCTAAGAAAAAATGGCAGTTTTTTCCAAAGATTGTGAATGAGAAAGCTAGAGAAGGCAAGTTTATGGAAATTGTGGATCATAGGCTAATAGAGATAGGGGATGTAGATGAGAGTGAAGTGAAAAAATTGGTGTATGTTGCTTTGTGGTGCATACAAGAGAGGCCAAGATTGAGGCCTAGCATGGCACAAGTTGTTGATATGCTTGAAGGGCGTGCTAGGTTGGATTTGCCACCTGATACTAGAATGATTCTTGTTGATTTGTTATCTGTGGATGAAGACCCTGCAACAGATCATAATAATATTGCAAGGTTATTGACCTCTTTGTCTAGTCATGAAGATAATAATATATCTACTTGCTCTATGGGAGGAACCACTGTTTTATCTGGAAGGTAG 1350 0.3911 MEDRKVITIAVVSVITLVIVIIVARVKLELSKAFFLILGADVAGILAVFSFVLIRQRYKIRRNLMESRLRSEGRELRIEYSFLRKVAGVPTKFRYKELEEATNKFQALIGKGSSASVFKGILKDGTSVAVKRIDGEERGEREFRSEVAAIAGVQHVNLVRLFGYCNAPSAPRYLVYEYVPNGSLDCWIFPSNDLTNRRVGGCLPWNLRYRVAIDVAKGLSYLQHDCRSTILHLDVKPENILLDESYRALVSDFGLSKLVGKDVSRVMTNIRGTRGYLAPEWLLEMGVSEKTDIYSYGMVLLEIIGGRRNVSRVEDAKDKSKKKWQFFPKIVNEKAREGKFMEIVDHRLIEIGDVDESEVKKLVYVALWCIQERPRLRPSMAQVVDMLEGRARLDLPPDTRMILVDLLSVDEDPATDHNNIARLLTSLSSHEDNNISTCSMGGTTVLSGR 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1401 449 PANTHER RECEPTOR-LIKE KINASE 1 449 - -
Lal19g1401 449 SUPERFAMILY Protein kinase-like (PK-like) 85 388 IPR011009 -
Lal19g1401 449 SMART serkin_6 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g1401 449 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Lal19g1401 449 Pfam Protein kinase domain 107 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g1401 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Lal19g1401 449 ProSiteProfiles Protein kinase domain profile. 103 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal19g1401 449 Gene3D Phosphorylase Kinase; domain 1 68 178 - -
Lal19g1401 449 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 449 - -
Lal19g1401 449 Gene3D Transferase(Phosphotransferase) domain 1 179 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1401 Lal-Chr19 16721460 16722809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1401 1 399 Receptor kinase-like Gene Family AT5G20050 66.833 0.0 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lal19g1401 Pkinase 2.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1401 - - gmx:100779485 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1401 19 16721460 16722809 Lal19g1401 19 16721460 16722809 ECH
Lal14g1826 14 17965228 17967618 Lal19g1401 19 16721460 16722809 LSH