Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1396 ATGAGTTTTTTCGATGATTTGCCACCCTATGTTCCGTCACCGCCGCCATATGCCGCGGCCCAAGCCACCGATGCCATTGTTTTGAGTCTTGAACAACAATTCCCAGTGAACAATGAACCACTGACCCCACATTCACCATTCAATGATCATGATCAACCCTCTTCATTCAAGAAAGCAAGAACATCTTCTGAGAGTAGCAACCACCCCAATGCACTTCCATACCCTCCTAGAATGTCGATGATGCATTCGCAGAACAACAACAATTCTGCACCTAACAAAGGTGGAAGTGGAACTGGCCACATTTTCTTCAAGACTCGAATGTGTGCAAAATTCAGACTTGGCTCATGTAGGAATGGTGAGAATTGTAACTTTGCACATGGGATTGAAGATATGAGGCACCCGCCGCCGAATTGGCAGGAACTTGTTGGCATGCCTGGCAGCAATGAAGAACAACAACAACGGGTTTTGGGGAATTGGGATGATGATCAGAAAATTATACATAAGATGAAGCTGTGCAAGAAGTATTATAATGGAGAAGAATGTCCTTTCGGCGAAAGGTGTAATTTTCTTCATGAAGACCCTGCCAAGTTTAGGGATGATTCTGGTAGGATTAGGGAGAGTTCAGCAATAAGCATTGGGACCAATGGATCCCCAAAGTCCTACAGGGATGGCTATTATAATAATTCAGAAACTAGTAAGGTTGTGACTGCGAATGTTGGTGTAAATGCTTATAGGGGAAATGTGAGGTCTACTTTTTGGAAGACTAAGCTTTGTATTAAGTGGGAGACTACAGGTCACTGCCCTTTTGGGGATGATTGTCACTTTGCTCATGGCCAATCAGAGTTGCATGTTCTTGGCGGACGCACTGAAACAGAAGCTGCAGGTGCTATTCCAATTTCAACTTATGCCACCGTTCCAACATTGCCAAAAGTTACATCCATTCCTGCCATTGATGCCGCACCTGCTCCTAGCAACATAGCAAGCCCACCTCTGGCAAATGAAGTGGAGCAAGGCAAGAAGTGTTTATTGAAGTGGAAAGGAACAAAGAAGATTAATCGAATTTATGCGGATTGGCTTGACGATGTGCCACTTGTGCAAAACGTGCCAAGTGGAGTGGAAACCTGA 1125 0.4462 MSFFDDLPPYVPSPPPYAAAQATDAIVLSLEQQFPVNNEPLTPHSPFNDHDQPSSFKKARTSSESSNHPNALPYPPRMSMMHSQNNNNSAPNKGGSGTGHIFFKTRMCAKFRLGSCRNGENCNFAHGIEDMRHPPPNWQELVGMPGSNEEQQQRVLGNWDDDQKIIHKMKLCKKYYNGEECPFGERCNFLHEDPAKFRDDSGRIRESSAISIGTNGSPKSYRDGYYNNSETSKVVTANVGVNAYRGNVRSTFWKTKLCIKWETTGHCPFGDDCHFAHGQSELHVLGGRTETEAAGAIPISTYATVPTLPKVTSIPAIDAAPAPSNIASPPLANEVEQGKKCLLKWKGTKKINRIYADWLDDVPLVQNVPSGVET 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1396 374 MobiDBLite consensus disorder prediction 36 94 - -
Lal19g1396 374 SUPERFAMILY CCCH zinc finger 166 193 IPR036855 GO:0046872
Lal19g1396 374 ProSiteProfiles Zinc finger C3H1-type profile. 102 129 IPR000571 GO:0046872
Lal19g1396 374 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 16 363 - -
Lal19g1396 374 Gene3D - 97 133 - -
Lal19g1396 374 Gene3D - 246 284 - -
Lal19g1396 374 Gene3D - 163 195 - -
Lal19g1396 374 MobiDBLite consensus disorder prediction 36 50 - -
Lal19g1396 374 SUPERFAMILY CCCH zinc finger 100 133 IPR036855 GO:0046872
Lal19g1396 374 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 253 279 IPR000571 GO:0046872
Lal19g1396 374 ProSiteProfiles Zinc finger C3H1-type profile. 252 280 IPR000571 GO:0046872
Lal19g1396 374 ProSiteProfiles Zinc finger C3H1-type profile. 166 194 IPR000571 GO:0046872
Lal19g1396 374 SUPERFAMILY CCCH zinc finger 250 283 IPR036855 GO:0046872
Lal19g1396 374 PANTHER CCCH ZINC FINGER/TIS11-RELATED 16 363 IPR045877 GO:0003729
Lal19g1396 374 Pfam CCCH-type zinc finger 106 127 IPR041367 -
Lal19g1396 374 Pfam CCCH-type zinc finger 170 191 IPR041367 -
Lal19g1396 374 MobiDBLite consensus disorder prediction 79 94 - -
Lal19g1396 374 MobiDBLite consensus disorder prediction 58 72 - -
Lal19g1396 374 SMART c3hfinal6 166 193 IPR000571 GO:0046872
Lal19g1396 374 SMART c3hfinal6 102 128 IPR000571 GO:0046872
Lal19g1396 374 SMART c3hfinal6 252 279 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1396 Lal-Chr19 16691129 16694092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1396 252 282 C3H Transcription Factor Family AT1G68200 61.290 2.92e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal19g1396 zf-CCCH 5.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1396 - - lang:109345375 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1396 19 16691129 16694092 Lal19g1396 19 16691129 16694092 ECH
Lal14g1843 14 18040471 18042994 Lal19g1396 19 16691129 16694092 LSH
Lal7g1274 7 18157517 18160483 Lal19g1396 19 16691129 16694092 LSH