Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1382 ATGGTTAGCCGACAGTGTTCTCCTCTTTTGGCCTTAACTTTCTTTGCCTCTCCCTCTTTTTTCTCACTCTATATCTTGGTACTCTGTTCCTTCTGTACTTGTCCATCACTATTTGTCACATTTCTGACAACAATAACACCAACATGGTACAATCAAGAAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCAGAAATTCGCCACCCTCTTCTGTATGAAAAGGAGGGTGTGGCTAGGTACATTTGAAACAGCAGAAGAAGCAGCACGAGCTTATGATCAAGCTGCGATTTTGATGAGTGGTCGAAATGCTAAAACCAATTTCCCAATAACCCAAACACCCGAAGGTGACACAAAGATTATGAGTAACAACGATGGCACCACTTCTTCCACCTCGAAGGATCTAGAAGAGATTCTACATGCTAAGCTTCGAAAATGTGGCAAGGTGCCTTCTCCTTCCATGACATGTTTGAGGCTTGACACTGAGAATTCTCACATTGGAGTGTGGCAAAAACGTGCTGGGCAAGATTCTGATTCAAATTGGGTTATGACTGTTCAGCTGGGAAAAAAGAAGAGTAACACCAATGAGGGTGGTGAAGATAGTAGTAGTTCTCTACCTTCTTCTACTTCTTCTGAAAATAATAATAATAATGATAATAATCAGTTTCAATCAGCATTAGTGGCAGGTCATGATCAGGAACAAGTGCAGGTGAAGACACAAATGGATGAAGAAGACAGAATTGCCCTTCAAATGATTGAAGAGTTACTCAATAGGAACTGTCCTAGCCCTTCAACCTTTAACAATAAGGAACAAGGAGATGATGCCAGCTTTTTACTTTAA 849 0.4134 MVSRQCSPLLALTFFASPSFFSLYILVLCSFCTCPSLFVTFLTTITPTWYNQESSEVSGSVIGVLGFQKFATLFCMKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDTKIMSNNDGTTSSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGQDSDSNWVMTVQLGKKKSNTNEGGEDSSSSLPSSTSSENNNNNDNNQFQSALVAGHDQEQVQVKTQMDEEDRIALQMIEELLNRNCPSPSTFNNKEQGDDASFLL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1382 282 SUPERFAMILY DNA-binding domain 76 113 IPR016177 GO:0003677
Lal19g1382 282 ProSiteProfiles AP2/ERF domain profile. 77 112 IPR001471 GO:0003700|GO:0006355
Lal19g1382 282 MobiDBLite consensus disorder prediction 262 282 - -
Lal19g1382 282 MobiDBLite consensus disorder prediction 111 134 - -
Lal19g1382 282 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 76 268 - -
Lal19g1382 282 MobiDBLite consensus disorder prediction 192 224 - -
Lal19g1382 282 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 76 268 - -
Lal19g1382 282 Pfam AP2 domain 75 103 IPR001471 GO:0003700|GO:0006355
Lal19g1382 282 Gene3D AP2/ERF domain 54 114 IPR036955 GO:0003700|GO:0006355
Lal19g1382 282 SMART rav1_2 58 118 IPR001471 GO:0003700|GO:0006355
Lal19g1382 282 CDD AP2 77 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1382 Lal-Chr19 16631403 16632663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1382 76 262 AP2-EREBP Transcription Factor Family AT1G15360 53.266 8.25e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal19g1382 AP2 1.1e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1382 - - gsj:114375848 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1382 19 16631403 16632663 Lal21g0338 21 2263238 2264735 ECH
Lal19g1382 19 16631403 16632663 Lal4g0221 4 1387798 1389541 ECH
Lal19g1382 19 16631403 16632663 Lal8g1574 8 20051974 20062995 ECH
Lal19g1382 19 16631403 16632663 Lal19g1382 19 16631403 16632663 ECH
Lal7g1263 7 18118597 18119901 Lal19g1382 19 16631403 16632663 LSH