Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1379 ATGTCTAGCTGCAGTGTTGATGTTGGTCTTGAGCAACTTTGCTACATCCCTTGCAAGTTCTGCAACATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGCTTGTTTGACATCGTGACCGTTCGATGTGGTCACTGCAGCAATCTATGGTCCGTGAATATGGCGTCTGCGTTTCAGTCTATGTCATGGCAAGATGTTCAGGCACCTACCCATTTTAATCATCCAGAGTATAGGATTGACACCAGTGGCTCCACTTCCAAATGCAACAACAGGATTGCATTGCGTGCACCCACCACACATGTTACTGAGGAAAGGATTGTGAACCGACCTCCCGAGAAGAGGCAGCGTGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATTCAGAGGATCAAGACCAATAACCCTGATATCAGTCACAGAGAAGCATTCAGTACTGCTGCAAAGAACTGGGCACATTTTCCTAATATTCACTTTGGGCTGATGTTGGAGAACAGCAACAATCAAGCTAAGATGGAGAACGTTTCTGACAAGCATTTGATGTCAACGCTATTGAACAAATGA 564 0.4486 MSSCSVDVGLEQLCYIPCKFCNIVLAVSVPCSSLFDIVTVRCGHCSNLWSVNMASAFQSMSWQDVQAPTHFNHPEYRIDTSGSTSKCNNRIALRAPTTHVTEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKTNNPDISHREAFSTAAKNWAHFPNIHFGLMLENSNNQAKMENVSDKHLMSTLLNK 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1379 187 Gene3D High mobility group box domain 100 157 IPR036910 -
Lal19g1379 187 Pfam YABBY protein 11 161 IPR006780 GO:0007275
Lal19g1379 187 PANTHER AXIAL REGULATOR YABBY 5 1 179 - -
Lal19g1379 187 PANTHER PROTEIN YABBY 6-RELATED 1 179 IPR006780 GO:0007275
Lal19g1379 187 SUPERFAMILY HMG-box 105 155 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1379 Lal-Chr19 16610856 16614294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1379 8 172 C2C2-YABBY Transcription Factor Family AT2G26580 73.939 1.43e-85 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lal19g1379 YABBY 1.2e-67 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1379 K25796 - gmx:100804731 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1821 14 17930046 17934059 Lal19g1379 19 16610856 16614294 LSH