Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1368 ATGAAAGTAGTTGTAGTATTAGTAGTTTGCAAAAGCATGGAGATGGAGAAGAAGTGTGGTTGTTGGTCTGTGTTGAAACGCAGTGTTAGAGGTGCTCCTTGCAAACCTTCCTCTGCTTCTTCCAGACCCTCACCTAACACTATTCCTCGTACTAGTCTTGTTTATGATGCAGCAACTGAGATACGATATCTGAATGCAAGCAATAGAGAACCTTGTCCTCCCATCGAAGCTCGAATATCTTCTGATAATCCTGATCCCCCACCTCAGGAAAATAGGGCTCCTTGCCAGCTCCTCCAATTCACATTTCAAGAACTAAAATCTGCAACTGGAAATTTCAGGCCTGATAGCATTCTTGGGGAGGGTGGTTTTGGTTATGTTTTCAAAGGATGGATCGAGGAAGATGGAACAGCTCCGGCGAAACCTGGATCAGGGATCACGGTGGCTGTCAAAAGCTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGGCTGAAGTTCACTTTCTTGGACAGCTTCATCATGCTAACCTTGTGAAACTTATCGGCTACTGCATTGAAGATGATCAGAGGCTTCTTGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAGAACCGTACCTCTTCCATGGTCCAACAGGGTTAAGATTTCTCTTGGTGCTGCAAAAGGACTGGCCTTCCTCCATAATGGTCCAGAACCAGTCATTTATAGAGATTTTAAAACATCAAACATTTTACTTGATACAGAGTATAATGCGAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGGCCTCAAGGAGACAAGACACATGTTTCTACAAGAGTTGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTTATGACAGGACACTTGACAGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTACTCGAGATTTTAACTGGAAGAAGATCAATGGACAAGAAGCGCCCAAGTGGAGAACAAAATCTTGTTTCGTGGGCTAGGCCATATTTAGCGGACAAGAGAAAAATATACCAACTTGTGGATCCTCGCTTGGAACTACATTATTCTCTAAAAGGGGTGCAGAAAATTTCCCAGTTAGCTTATAATTGCCTCAGTAGAGACCCCAAATGCCGTCCTAACATGGATGAAGTTGTGAAAGCTCTGACTCCACTGCAGGATCTTAACGACCTAGCAATCTTGTCTTATCACTCTCGTTTATCTCAACAAGGGAGAAGAAAAAAGAAATCAGATGGAAATCCAATGGTCACCTACACACAATCCAAGAGCATGAGGGCTTCTCCTTTGAATACCGGCAAGCAGCATCGCGCTGCGAAGTGA 1347 0.4321 MKVVVVLVVCKSMEMEKKCGCWSVLKRSVRGAPCKPSSASSRPSPNTIPRTSLVYDAATEIRYLNASNREPCPPIEARISSDNPDPPPQENRAPCQLLQFTFQELKSATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVHFLGQLHHANLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKISLGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKIYQLVDPRLELHYSLKGVQKISQLAYNCLSRDPKCRPNMDEVVKALTPLQDLNDLAILSYHSRLSQQGRRKKKSDGNPMVTYTQSKSMRASPLNTGKQHRAAK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1368 448 Gene3D Transferase(Phosphotransferase) domain 1 198 408 - -
Lal19g1368 448 Pfam Protein tyrosine and serine/threonine kinase 116 391 IPR001245 GO:0004672|GO:0006468
Lal19g1368 448 MobiDBLite consensus disorder prediction 422 439 - -
Lal19g1368 448 SUPERFAMILY Protein kinase-like (PK-like) 95 398 IPR011009 -
Lal19g1368 448 Gene3D Phosphorylase Kinase; domain 1 88 197 - -
Lal19g1368 448 MobiDBLite consensus disorder prediction 72 91 - -
Lal19g1368 448 PANTHER OS01G0588500 PROTEIN-RELATED 91 418 - -
Lal19g1368 448 PANTHER OS01G0588500 PROTEIN 91 418 - -
Lal19g1368 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Lal19g1368 448 MobiDBLite consensus disorder prediction 408 448 - -
Lal19g1368 448 ProSitePatterns Protein kinases ATP-binding region signature. 118 150 IPR017441 GO:0005524
Lal19g1368 448 CDD STKc_IRAK 118 394 - -
Lal19g1368 448 ProSiteProfiles Protein kinase domain profile. 112 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1368 Lal-Chr19 16477904 16482153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1368 100 391 Glycoside Hydrolase AT3G07070 55.405 1.79e-110 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal19g1368 PK_Tyr_Ser-Thr 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1368 - - aprc:113848012 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1368 19 16477904 16482153 Lal19g1368 19 16477904 16482153 ECH