Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1352 ATGGGTGCAGTCATTCTCCCAGATCTCGGGACTGAAATTTTGATCCCTGTTTGCGCTGTTATTGGAATCATTTTCGCTCTTTTCCAATGGTTTCTCGTCGCAAAGGTGAAACTCACTGCTGATAGAGACGCTTCTCCCAACGCTGCTGGTAAGAATGGTTACAATGATTACCTCATTGAAGAGGAGGAAGGTATGAATGACCACAACGTCGTTCTCAAATGTGCTGAAATCCAAAACGCTATCTCTGAAGGAGCAACATCGTTCCTTTTCACCGAATATAAATATGTTGGAATCTTCATGGTGTTTTTTGCCGTCTTGATATTCGTTTTCCTTGGATCTGTGGAAGGATTCAGCACAAGCCACCAGCCTTGCACCTATGATCAAACTAAGATCTGCAAGCCAGCTCTTGCCACTGCCCTTTTCAGCACCATATCATTCCTCCTCGGAGGCATCACATCACTTATTTCTGGTTTCCTTGGAATGAAAATTGCAACTTATGCTAATGCAAGAACCACACTGGAAGCTAGAAAGGGTGTTGGGAAAGCTTTCATAGTAGCATTTAGATCTGGTGCAGTTATGGGATTTCTCCTTGCTGCAAATGGTCTTTTGGTCCTGTACATTACCATCAACCTGTTCAAGATTTACTATGGTGATGACTGGGGTGGTCTTTTTGAGGCCATCACTGGTTATGGTCTTGGTGGTTCTTCCATGGCACTTTTTGGCAGAGTTGGTGGGGGTATATACACTAAGGCTGCTGATGTTGGTGCTGATCTTGTTGGCAAGGTTGAAAGGAACATTCCTGAGGATGACCCTAGAAATCCTGCTGTGATTGCTGATAATGTCGGTGACAATGTTGGTGACATTGCTGGCATGGGTTCTGATCTTTTTGGTTCATATGCTGAGTCATCCTGTGCTGCCCTTGTTGTTGCTTCCATCTCTTCTTTTGGGGTGAATCACGAGCTGACTGCTATGTTATACCCTCTCATTATCAGTTCTGTGGGTATCCTTGTTTGTTTGCTTACCACCTTATTTGCAACCGACTTTTTTGAGATCAAGGCTGTAAAGGAAATTGAACCAGCATTGAAAAAACAGCTCATTATTTCCACTGTGTTTATGACTGCTGGAATTGCAATTGTTAGCTGGGTTGCACTCCCATCTTCATTTACTATCTTCAATTTTGGAGTGCAGAAAGTTGTCAAGAACTGGCAGCTATTCTTGTGTGTTGCTGTTGGTCTTTGGGCAGGGCTTATTATTGGATTTGTAACTGAGTATTATACCAGCAATGCATATAGCCCTGTGCAAGATGTTGCAGACTCTTGCAGGACTGGTGCTGCTACTAATGTTATCTTTGGGCTTGCCTTGGGATACAAGTCTGTCATTGTACCAATTTTTGCCATCGCAGTTAGTATTTTTGTTAGTTTCAGCTTTGCTGCCATGTATGGTATTGCTGTTGCTGCACTCGGGATGTTGAGTACCATAGCCACTGGATTGGCCATTGATGCATATGGTCCAATCAGTGACAATGCTGGAGGTATTGCTGAGATGGCTGGGATGAGTCACAGAATCCGAGAGAGAACTGATGCTCTTGATGCTGCAGGAAACACGACTGCTGCTATTGGAAAGGGGTTTGCCATTGGTTCTGCTGCCCTTGTGTCTTTGGCCCTATTTGGTGCCTTTGTGAGCCGAGCTGCTATTACAACTGTTGATGTGTTAACTCCAAAGGTTTTTATTGGTCTAATCGTGGGTGCCATGCTTCCTTACTGGTTTTCTGCCATGACCATGAAGAGTGTGGGAAAAGCTGCTCTGAAGATGGTTGAAGAAGTACGTAGGCAATTCAATACCATTCCAGGTTTGCTAGAGGGAACTACTAAGCCTGACTATGCCACATGTGTCAAGATCTCCACTGATGCTTCCATTAAAGAAATGGTACCACCTGGTGCTCTTGTCATGCTTACTCCCCTTATTGTTGGGATCCTTTTTGGAGTAGAAACACTTTCTGGTGTCCTTGCTGGATCTCTGGTGTCTGGTGTACAGATTGCTATCTCTGCATCCAACACTGGTGGTGCTTGGGATAATGCCAAAAAGTACATTGAGGCTGGTGCTTCTGAGCATGCAAGAAGCCTTGGTCCAAAAGGGTCAGATCCTCACAAAGCAGCTGTTATTGGTGACACCATTGGGGACCCTCTCAAGGATACATCTGGACCATCACTTAACATCCTCATCAAGTTGATGGCTGTTGAGTCTCTTGTCTTTGCTCCTTTCTTTGCTACACATGGTGGCTTGCTTTTCAAGATATAA 2298 0.4439 MGAVILPDLGTEILIPVCAVIGIIFALFQWFLVAKVKLTADRDASPNAAGKNGYNDYLIEEEEGMNDHNVVLKCAEIQNAISEGATSFLFTEYKYVGIFMVFFAVLIFVFLGSVEGFSTSHQPCTYDQTKICKPALATALFSTISFLLGGITSLISGFLGMKIATYANARTTLEARKGVGKAFIVAFRSGAVMGFLLAANGLLVLYITINLFKIYYGDDWGGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGVNHELTAMLYPLIISSVGILVCLLTTLFATDFFEIKAVKEIEPALKKQLIISTVFMTAGIAIVSWVALPSSFTIFNFGVQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIVPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAAITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGKAALKMVEEVRRQFNTIPGLLEGTTKPDYATCVKISTDASIKEMVPPGALVMLTPLIVGILFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARSLGPKGSDPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKI 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1352 765 PIRSF H+-PPtase 11 764 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lal19g1352 765 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 1 765 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lal19g1352 765 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 9 756 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lal19g1352 765 PANTHER PYROPHOSPHATE-ENERGIZED VACUOLAR MEMBRANE PROTON PUMP 1 765 - -
Lal19g1352 765 Pfam Inorganic H+ pyrophosphatase 21 751 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Lal19g1352 765 TIGRFAM V_PPase: V-type H(+)-translocating pyrophosphatase 11 761 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1352 Lal-Chr19 16365863 16370538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1352 5 629 Primary Pumps ATPases AT1G15690 88.217 0.0 1129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1352 K23025 - gmx:100775864 1438.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1352 19 16365863 16370538 Lal19g1352 19 16365863 16370538 ECH
Lal14g1805 14 17783367 17788175 Lal19g1352 19 16365863 16370538 LSH
Lal7g1218 7 17832511 17837675 Lal19g1352 19 16365863 16370538 LSH