Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1346 ATGGGGAAGAAAAAGAAGCAAGTAGAACAAACAGGTTTAGATAATGGAAGTCAAAGCAAAGTAAGAGATAGAAGCCATGAAGCATATCAGAATAAATGTATATCCATTTCTCAATTGTTGAAGGGTGAGGGAAACAAGCTTTTTTGTAAGAGAGACCTTGAAGGAGCTTTAATCAAATATGAGAAAGCCATCACATTGCTTCCAACAAATCATGTAGATGTGTCCAATTTGCGGAGTAGCATGGCTGCGTGCTACATGCAAATGGGACTCAGTGAGAGGGCGATACATGAATGCGATTTGGCCCTTCAAGTAACTCCAAATTATAGTATAGCTCTGTTGAAGAGGGCAAGGTGCTATAAGGATTTAAATAGGCTTGATTTAGCTCTGAGAGATGTTAGAACCGTTGTGAAGATGAACCCAAATAATGTTACGGCATTGGATCTTTATGAAAATGTGAAAAATGCACTTGAGGAGAAAGGGTTAAGAGTAAATGATATGACAATTGAGTTGCCTCTGGATTATGATGAGCCTCCTACTACTTTGCCTCCACAAAAGGTAGTGAAAGAGACGACACGCAAGAAAAATACCAATAGAAAGGAGGAGAAGGCGCTTGATAACAAAATCCCAAAGAAGCAAGCTGAGGTGAAATTTGAAGAGAAGAAGGCTGAGGACAGTATTATGAAAAAGACCAATGAATTCAAAAAGAAGGCAACGAACAAAATTGATGAGAAGAAGGCTGAGGACAGTATTATGAAAAAGACCAATATATTCAAAAAGATGGTAACAGAAAAAATTGATGAGAAGAAGGCTGATATTAATGAAGCTGTAGATGAAAAAGGTAACGGCAGAAGGGAAAATTTACCTAAGAAAACTGCAAAACTTATTTTTGGTGAGGATATAAGATGGGCTGATTTGCCTGTTAATTGCAGCCTCTTGCAGCTAAGAGAAATTATCTGTGACCGATTTCCAAGCCTAGGAGCTGTTCTTGTCAAGTACAGAGACCAGGAAGGAGATTTGGTTACAATCACTTCCGATGATGAATTAAAATGGGCCGAAACAGGAAATCAGGGTTCTGTCCGGTTGTATCTAGTCGAAGCTACTCCTGAGCATGATCCAATGTTTGAGAAACTTAAAGCAAACATGGGGGAGGAGTTTGGGATTAATAATGAACCTGAGAATGGTTGCATGGTAAAAGCCAAGGAAATTATTACCCCATCCTGCATTGAAGATTGGGTAATTCTGTTTGCCAAACTGTTCAAGAACCATGTTGGATTTGAATCTGACAGATATTTGGATTTTCATGAACTTGGGATGGAGCTTTATTCTGAGGCTCTGGAGGAGACAGTTACAAGTAAAGAAGCACAAGGCCTATTTGACATGGCCGGAGATAAGTTCCAAGAGATGACTGCTCTAGCATTGTTCAACTGGGGAAATGTTCATATGTCTAGGGCAAGGAAGAAAGTATATTTCAAAGATGATTCTTCTAAAGAACATCCATGTGAACAAATCAAAAGGTCATATGAATGGGCACAGAAAGAATATGCAAAAGCAGGAGAAAAATATGAAGTGGCCATTAAAATTAAGTCAGATTTTTATGAAGCCTTCGTTGCGCTGGGGCAGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATTATGCGTTCAGCAATGATGTAGATTTAGCGACATGGCCCTCCCCTGAGGTTCTTCAGCTTTACTACAATTCCGACGATAATATGAAGAGAGGAATGCAGATATGGGAAGAATTAGATAAGCAGCACTCGGGAAAAGCATCTAATTCAAAGGATGTTAGATTACATTTGCAGAGCATGGGGTTGGATGGGATAATTAAAACTACAGCATCAGATGATATTGCTGCACAGGCAACAAATATTAGATCTCAAATAAATCTCCTGTGGGGTACCGTGCTATATGAATGTTCGATTGCAGAGTTCAAATTACAGCTACCGGTTTGGCATGAGTCTCTGCAAGTAGCAATTAAGAAGTTTGAACATGCCGGAGCTTCTCCAACAGATATAGCTGTAATGTTGAAGAACCACTGTTCAAATAATACTGCAGTAGATGGTCTAGGATTCAAAATGGATGAAATAGTACAGGCATGGAATGAGATGTATGAAGCTAAAAAGTGGCAGAGTAGAATTCCATCATTTCGTTTGGATCCCTTATTTAAACGGCGAGTTCCAAAAGTATATAATGGCTTCGAGCCTGCATGA 2232 0.3929 MGKKKKQVEQTGLDNGSQSKVRDRSHEAYQNKCISISQLLKGEGNKLFCKRDLEGALIKYEKAITLLPTNHVDVSNLRSSMAACYMQMGLSERAIHECDLALQVTPNYSIALLKRARCYKDLNRLDLALRDVRTVVKMNPNNVTALDLYENVKNALEEKGLRVNDMTIELPLDYDEPPTTLPPQKVVKETTRKKNTNRKEEKALDNKIPKKQAEVKFEEKKAEDSIMKKTNEFKKKATNKIDEKKAEDSIMKKTNIFKKMVTEKIDEKKADINEAVDEKGNGRRENLPKKTAKLIFGEDIRWADLPVNCSLLQLREIICDRFPSLGAVLVKYRDQEGDLVTITSDDELKWAETGNQGSVRLYLVEATPEHDPMFEKLKANMGEEFGINNEPENGCMVKAKEIITPSCIEDWVILFAKLFKNHVGFESDRYLDFHELGMELYSEALEETVTSKEAQGLFDMAGDKFQEMTALALFNWGNVHMSRARKKVYFKDDSSKEHPCEQIKRSYEWAQKEYAKAGEKYEVAIKIKSDFYEAFVALGQQQFEQAKLSWYYAFSNDVDLATWPSPEVLQLYYNSDDNMKRGMQIWEELDKQHSGKASNSKDVRLHLQSMGLDGIIKTTASDDIAAQATNIRSQINLLWGTVLYECSIAEFKLQLPVWHESLQVAIKKFEHAGASPTDIAVMLKNHCSNNTAVDGLGFKMDEIVQAWNEMYEAKKWQSRIPSFRLDPLFKRRVPKVYNGFEPA 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1346 743 Coils Coil 258 278 - -
Lal19g1346 743 SMART tpr_5 109 142 IPR019734 GO:0005515
Lal19g1346 743 SMART tpr_5 37 70 IPR019734 GO:0005515
Lal19g1346 743 SMART tpr_5 75 108 IPR019734 GO:0005515
Lal19g1346 743 Pfam PB1 domain 291 363 IPR000270 GO:0005515
Lal19g1346 743 Gene3D Tetratricopeptide repeat domain 28 166 IPR011990 GO:0005515
Lal19g1346 743 Coils Coil 227 247 - -
Lal19g1346 743 SUPERFAMILY TPR-like 36 156 IPR011990 GO:0005515
Lal19g1346 743 SMART PB1_new 289 366 IPR000270 GO:0005515
Lal19g1346 743 MobiDBLite consensus disorder prediction 1 24 - -
Lal19g1346 743 ProSiteProfiles TPR repeat profile. 109 142 IPR019734 GO:0005515
Lal19g1346 743 Gene3D - 289 365 - -
Lal19g1346 743 ProSiteProfiles PB1 domain profile. 289 362 IPR000270 GO:0005515
Lal19g1346 743 PANTHER PROTEIN CLMP1 2 741 IPR044517 -
Lal19g1346 743 PANTHER PROTEIN PHOX3 2 741 - -
Lal19g1346 743 CDD PB1 293 363 - -
Lal19g1346 743 SUPERFAMILY CAD & PB1 domains 291 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1346 Lal-Chr19 16326522 16328840 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1346 - - lang:109354753 1287.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1346 19 16326522 16328840 Lal19g1346 19 16326522 16328840 ECH
Lal19g1346 19 16326522 16328840 Lal17g1391 17 15329493 15334398 PCT
Lal17g1391 17 15329493 15334398 Lal19g1346 19 16326522 16328840 PCT