Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1342 ATGGCTGAACAAACTGAGAAGGCTTTCCTTAAGCAACCAAAAGTGTTTCTGAGCTCAAAGAAATCTGGTAAGGGAAAGAGGCCTGGTAAAGGTGGCAATCGCTTTTGGAAATCCATTGGACTTGGATTCAAGACTCCAAAAGAAGCCATTGATGGAACCTATATTGACAAGAAATGTCCCTTCACTGGCAACGTTTCCATCCGAGGCCGCATCTTATCTGGAACTTGTCACAGTGCTAAGATGAATAGGACTATAATTGTTAGGAGGAACTATCTTCATTTTATTAAGAAGTATCAAAGGTATGAGAAGAGACATTCAAACATTCCTGCTCATGTGTCACCTTGCTTCCGTGTGAAGGAAGGTGACCATGTTATTATTGGCCAATGCAGACCAATCTCAAAGACAGTGAGGTTCAATGTGCTGAAAGTGATCCCAGCTGGATCTTCTGGTGGTGCCAAGAAGGCATTTACTGGAATCTGA 480 0.425 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPKEAIDGTYIDKKCPFTGNVSIRGRILSGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPAGSSGGAKKAFTGI 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1342 159 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal19g1342 159 Gene3D - 1 158 - -
Lal19g1342 159 PANTHER 40S RIBOSOMAL PROTEIN S11-1-RELATED 1 159 - -
Lal19g1342 159 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Lal19g1342 159 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 159 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal19g1342 159 TIGRFAM uS17_arch: ribosomal protein uS17 42 143 IPR028333 -
Lal19g1342 159 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal19g1342 159 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal19g1342 159 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal19g1342 159 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Lal19g1342 159 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1342 Lal-Chr19 16296710 16298812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1342 1 159 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 90.566 8.23e-99 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1342 K02949 - rcu:8266659 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1342 19 16296710 16298812 Lal19g1342 19 16296710 16298812 ECH
Lal14g1796 14 17707477 17719789 Lal19g1342 19 16296710 16298812 LSH
Lal7g1208 7 17757780 17770689 Lal19g1342 19 16296710 16298812 LSH