Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1341 ATGGGTTCAGGGCCTAGTAGACTTGGGTCTCGTCAATCATCTACTACAAGAGATAGGATTAACCGAAACCCTCGCTTCAATGTTTCATCTCTTCTCTGCGGTTCATCCACCTCACGCTCCACCTATCAGATGGAAGAATATCCATCTGAACTTCAGGTAGATTCAGCAACAGATTTTGATGATGGAATTCAGAATGTCACTGAGGAATCATCTTTATTTTGTACAGAAAGTAGAATTAGTGTCAGTCCCCATGCTGAAACTTCAACCTCATCTGATACTAGAACTGAGTTGTACGGGAGTACTACTGTTGATGGTTCTTCCCGAAATGTTGCCGCAAGTAGTCAGACGATGCGTTTGTCTGAATTTGAGGAGCTAGTCCCTCCTTATCAGGTAAGTGCTGGTCATAGTCGTCATGAATCATATAGGAATAGTAGCAACACAGCTAGTACTTCATTTGTAGAACAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGAATCAATCAATAATGTTAATGATCTAGAGGTTAATGGGGATTCTCAAATCTCTAGTGAGACAATGCATCTCTGGAGTTCAACCCCTCAAGAGCATGGAATTTCAAGTTCTGGTGAATTTTCTGTTGAGAACCAGACTAGCGCATTCATAGCTATCCATAGTTCTTCTTCCGATCCTGTTGCTCAAGCTTCCAACTTACCAGGAAATTCTCAATCACTAGAAGAAGAACAACGTCGGGAGACGATACCTTCAGGTTTAGGTATTCTTGTGTCCAACCGGGAAAGAGGGCAGGGAAGCGATGGTATGCTTCAAGTTGATGTGGTCACAATATCATCCAACATTTTGTCTGATGGCAATGCTGATGCCAATGGCCATGATGCTAGAAGGAGTGGTAGAAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTTGGTAATTCTGCGACAATGGTCTTCTCTGCTGGTGGTGCTGATGATCCAGAATCTCAGGATCGATGGCTTGTTGATTTTGGTGGTGATTTCTCAAATGATAGGGTTGGAGGTTCTTCTGGCTATATGGGCAGTAGAATTCACAGATTGAATGAAAGAATGAGGCACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGTGGCCTTGATGAAATCAGTCAGTTGGATTCTCCATGTCCATTAGGACTCCATGCAAATGGCATGTGCTCATGTGACTCTTCCCCAATAGCTGAGGAATCTAGCACCCGAGCAAGTATTTCTAGAATAGTCATGCTAGCAGAGGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAGCCTGGAATACTTTCCCTATCCATGGTCTCACTCCCTGCGCCTGAATCAATTGTTGACTCTTTCCCTTTGAAGTCTCACAAGAAGGTTGATGCAGCCGATGATGACAATGACACTGAACAATGTTACATATGCCTGGCGGAGTACGAAGAGGGGGACCAAATACGAGTTCTTCCTTGCAACCATGAATATCACATGATGTGTGTTGATAAGTGGCTTAAAGAAATACATGGTGTATGTCCTCTCTGTCGTGGCAATGTTTGTGGAGGATTCCCGGAGTCTGCCACCGACTCAGAAGTACCATCTAATTGA 1629 0.4365 MGSGPSRLGSRQSSTTRDRINRNPRFNVSSLLCGSSTSRSTYQMEEYPSELQVDSATDFDDGIQNVTEESSLFCTESRISVSPHAETSTSSDTRTELYGSTTVDGSSRNVAASSQTMRLSEFEELVPPYQVSAGHSRHESYRNSSNTASTSFVEQSSDPVSVNVSANKESINNVNDLEVNGDSQISSETMHLWSSTPQEHGISSSGEFSVENQTSAFIAIHSSSSDPVAQASNLPGNSQSLEEEQRRETIPSGLGILVSNRERGQGSDGMLQVDVVTISSNILSDGNADANGHDARRSGRRLFWDAFSRRSSRRLGNSATMVFSAGGADDPESQDRWLVDFGGDFSNDRVGGSSGYMGSRIHRLNERMRHSRSEIWERLRGGLDEISQLDSPCPLGLHANGMCSCDSSPIAEESSTRASISRIVMLAEALFEVLDEIHRQPGILSLSMVSLPAPESIVDSFPLKSHKKVDAADDDNDTEQCYICLAEYEEGDQIRVLPCNHEYHMMCVDKWLKEIHGVCPLCRGNVCGGFPESATDSEVPSN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1341 542 CDD mRING-H2-C3H2C2D_ZSWM2 480 523 - -
Lal19g1341 542 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 540 - -
Lal19g1341 542 SMART ring_2 481 522 IPR001841 -
Lal19g1341 542 SUPERFAMILY RING/U-box 459 526 - -
Lal19g1341 542 MobiDBLite consensus disorder prediction 224 268 - -
Lal19g1341 542 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 540 - -
Lal19g1341 542 ProSiteProfiles Zinc finger RING-type profile. 481 523 IPR001841 -
Lal19g1341 542 MobiDBLite consensus disorder prediction 1 27 - -
Lal19g1341 542 MobiDBLite consensus disorder prediction 224 240 - -
Lal19g1341 542 MobiDBLite consensus disorder prediction 133 159 - -
Lal19g1341 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 447 527 IPR013083 -
Lal19g1341 542 MobiDBLite consensus disorder prediction 136 159 - -
Lal19g1341 542 Pfam Ring finger domain 480 523 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1341 Lal-Chr19 16288007 16294465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g1341 390 533 C3H Transcription Factor Family AT5G45290 51.572 3.74e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1341 - - gmx:100783604 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1341 19 16288007 16294465 Lal19g1341 19 16288007 16294465 ECH
Lal7g1205 7 17743264 17747176 Lal19g1341 19 16288007 16294465 LSH